PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 5.1.1.10 as complete word(s)

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Found 19 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 19 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 16 of these sequences

Found 2 clusters of similar sequences. Another 3 sequences are not clustered. Download as table or as draft rules or view by cluster

Achromobacter obae

ACLR_ACHOB / Q7M181 2-aminohexano-6-lactam racemase; 2-amino-hexano-6-lactam racemase; Alpha-amino-epsilon-caprolactam racemase; EC 5.1.1.15 from Achromobacter obae
Q7M181 amino-acid racemase (EC 5.1.1.10); 2-aminohexano-6-lactam racemase (EC 5.1.1.15) from Achromobacter obae
PFams: Aminotran_3
436 amino acids: PaperBLAST, CDD (Cluster 1)

Aeromonas hydrophila

BSR_AERHH / A0KLG5 Broad specificity amino-acid racemase; Broad spectrum racemase; EC 5.1.1.10 from Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240)
PFams: Ala_racemase_N, Ala_racemase_C
408 amino acids: PaperBLAST, CDD (Cluster 2)

Bacillus subtilis

RACX_BACSU / P32960 Broad specificity amino-acid racemase RacX; EC 5.1.1.10 from Bacillus subtilis (strain 168)
P32960 amino-acid racemase (EC 5.1.1.10) from Bacillus subtilis
PFams: Asp_Glu_race
227 amino acids: PaperBLAST, CDD (Singleton 3)

Citreicella SE45

D0D2T1 amino-acid racemase (EC 5.1.1.10) from Citreicella sp. SE45
PFams: Aminotran_3
438 amino acids: PaperBLAST, CDD (Cluster 1)

Escherichia coli

b2840 amino acid racemase YgeA from Escherichia coli K-12 substr. MG1655
YGEA_ECOLI / P03813 Broad specificity amino-acid racemase YgeA; EC 5.1.1.10 from Escherichia coli (strain K12)
P03813 amino-acid racemase (EC 5.1.1.10) from Escherichia coli
P03813 amino acid racemase YgeA from Escherichia coli (strain K12)
PFams: Asp_Glu_race
230 amino acids: PaperBLAST, CDD (Singleton 2)

Janibacter HTCC

A3TM80 amino-acid racemase (EC 5.1.1.10); 2-aminohexano-6-lactam racemase (EC 5.1.1.15) from Janibacter sp. HTCC 2649
PFams: Aminotran_3
432 amino acids: PaperBLAST, CDD (Cluster 1)

Lactobacillus sakei

A0A223K4L6 amino-acid racemase (EC 5.1.1.10) from Lactobacillus sakei
PFams: Aminotran_1_2
391 amino acids: PaperBLAST, CDD (Singleton 1)

Mesorhizobium opportunistum

F7Y223 amino-acid racemase (EC 5.1.1.10); 2-aminohexano-6-lactam racemase (EC 5.1.1.15) from Mesorhizobium opportunistum
PFams: Aminotran_3
438 amino acids: PaperBLAST, CDD (Cluster 1)

Mycolicibacterium vanbaalenii

A1T974 amino-acid racemase (EC 5.1.1.10); 2-aminohexano-6-lactam racemase (EC 5.1.1.15) from Mycolicibacterium vanbaalenii
PFams: Aminotran_3
435 amino acids: PaperBLAST, CDD (Cluster 1)

Ochrobactrum anthropi

A6X7I5 amino-acid racemase (EC 5.1.1.10); 2-aminohexano-6-lactam racemase (EC 5.1.1.15) from Ochrobactrum anthropi
PFams: Aminotran_3
436 amino acids: PaperBLAST, CDD (Cluster 1)

Q06K28 amino-acid racemase (EC 5.1.1.10) from Ochrobactrum anthropi
PFams: Aminotran_3
439 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas putida

BSR_PSEPU / I6LNY0 Broad specificity amino-acid racemase; EC 5.1.1.10 from Pseudomonas putida (Arthrobacter siderocapsulatus)
PFams: Ala_racemase_N, Ala_racemase_C
409 amino acids: PaperBLAST, CDD (Cluster 2)

BSR_PSEPK / Q88GJ9 Broad specificity amino-acid racemase; Broad spectrum racemase; EC 5.1.1.10 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Q88GJ9 amino acid racemase (EC 5.1.1.10; EC 5.1.1.24; EC 5.1.1.18; EC 5.1.1.2; EC 5.1.1.9; EC 5.1.1.5; EC 5.1.1.1) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PFams: Ala_racemase_N, Ala_racemase_C
409 amino acids: PaperBLAST, CDD (Cluster 2)

Pseudomonas taetrolens

BSR_PSETA / I0J1I6 Broad specificity amino-acid racemase; Arginine racemase; Broad substrate specificity racemase; EC 5.1.1.10 from Pseudomonas taetrolens
I0J1I6 amino-acid racemase (EC 5.1.1.10) from Pseudomonas taetrolens
PFams: Ala_racemase_N, Ala_racemase_C
409 amino acids: PaperBLAST, CDD (Cluster 2)

Pyrococcus horikoshii

BARAC_PYRHO / O57878 Broad substrate specificity amino-acid racemase; BAR; EC 5.1.1.10 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
O57878 amino-acid racemase (EC 5.1.1.10) from Pyrococcus horikoshii
PFams: Aminotran_3
466 amino acids: PaperBLAST, CDD (Cluster 1)

Sinorhizobium medicae

A6UKD1 amino-acid racemase (EC 5.1.1.10); 2-aminohexano-6-lactam racemase (EC 5.1.1.15) from Sinorhizobium medicae
PFams: Aminotran_3
437 amino acids: PaperBLAST, CDD (Cluster 1)

Sinorhizobium meliloti

H0FT96 amino-acid racemase (EC 5.1.1.10); 2-aminohexano-6-lactam racemase (EC 5.1.1.15) from Sinorhizobium meliloti
PFams: Aminotran_3
437 amino acids: PaperBLAST, CDD (Cluster 1)

Q92MM4 amino-acid racemase (EC 5.1.1.10); 2-aminohexano-6-lactam racemase (EC 5.1.1.15) from Sinorhizobium meliloti
PFams: Aminotran_3
437 amino acids: PaperBLAST, CDD (Cluster 1)

Vibrio cholerae

BSR_VIBCH / Q9KSE5 Broad specificity amino-acid racemase; Broad spectrum racemase; EC 5.1.1.10 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
PFams: Ala_racemase_N, Ala_racemase_C
407 amino acids: PaperBLAST, CDD (Cluster 2)