GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for Dshi_1195 (TRAP transporter for succinate, fumarate, L-malate, and 2-oxoglutarate, substrate-binding component) in 2-oxoglutarate (alpha-ketoglutarate) catabolism

Or see other characterized proteins similar to Dshi_1195

Or see all steps for 2-oxoglutarate (alpha-ketoglutarate) catabolism

Or cluster curated proteins matching a keyword

Definition of Dshi_1195

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 325-330 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A8LI83 TRAP transporter solute receptor
330 amino acids: PaperBLAST, CDD, Compare to cluster

E4PQE3 Immunogenic protein
325 amino acids: PaperBLAST, CDD, Compare to cluster