GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for dctM (2-oxoglutarate TRAP transporter, large permease component DctM) in 2-oxoglutarate (alpha-ketoglutarate) catabolism

Or see other characterized proteins similar to dctM

Or see all steps for 2-oxoglutarate (alpha-ketoglutarate) catabolism

Or cluster curated proteins matching a keyword

Definition of dctM

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 465-467 amino acids (2/3 heteromeric)

The first sequence in each cluster is the seed.

I7DRS6 TRAP transporter, subunit DctM
467 amino acids: PaperBLAST, CDD, Compare to cluster

Shew_1444 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component from Shewanella loihica PV-4
PFams: DctM
Heteromeric, 465 amino acids: PaperBLAST, CDD, Compare to cluster

Sama_2211 alpha-ketoglutarate TRAP transporter, large permease component from Shewanella amazonensis SB2B
PFams: DctM
Heteromeric, 466 amino acids: PaperBLAST, CDD, Compare to cluster