Other Characterized Proteins Similar to dctM

Finding the characterized proteins for dctM (2-oxoglutarate TRAP transporter, large permease component DctM) in 2-oxoglutarate (alpha-ketoglutarate) catabolism

Or see clustering for step dctM

Or see all steps for 2-oxoglutarate (alpha-ketoglutarate) catabolism

Or cluster curated proteins matching a keyword

Definition of dctM

• Curated sequence 6938090: alpha-ketoglutarate TRAP transporter, large permease component
• Curated sequence 5208943: dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component
• UniProt sequence I7DRS6: SubName: Full=TRAP transporter, subunit DctM {ECO:0000313|EMBL:AFO91751.1};
• Ignore hits to O07838 when looking for 'other' hits (C4-dicarboxylate TRAP transporter large permease protein DctM. DctM, component of Tripartite dicarboxylate:H+ symporter (substrates include: fumarate, D- and L-malate, succinate, succinamide, orotate, iticonate and mesaconate))
• Ignore hits to Q9HU16 when looking for 'other' hits (C4-dicarboxylate TRAP transporter large permease protein DctM)
• Comment: O07838 and Q9HU16 are reported to transport various dicarboxylates, and transport of 2-oxoglutarate does not seem to have been tested, so they are marked ignore.

Fetched 3 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 2 other characterized sequences. (Found 4 hits including self hits.)

Removing ignored items reduces this to 0 close sequences.

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for dctM.)

DCTM_RHOCA / O07838 C4-dicarboxylate TRAP transporter large permease protein DctM from Rhodobacter capsulatus (Rhodopseudomonas capsulata)
TC 2.A.56.1.1 / O07838 DctM, component of Tripartite dicarboxylate:H+ symporter (substrates include: fumarate, D- and L-malate, succinate, succinamide, orotate, iticonate and mesaconate) from Rhodobacter capsulatus (Rhodopseudomonas capsulata)
PFams: DctM
Heteromeric, 440 amino acids: PaperBLAST, CDD, SwissProt::O07838
47% identical to

Sama_2211 alpha-ketoglutarate TRAP transporter, large permease component from Shewanella amazonensis SB2B
PFams: DctM
Heteromeric, 466 amino acids: PaperBLAST, CDD

DCTM_PSEAE / Q9HU16 C4-dicarboxylate TRAP transporter large permease protein DctM from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: DctM
427 amino acids: PaperBLAST, CDD, SwissProt::Q9HU16
47% identical to

I7DRS6 TRAP transporter, subunit DctM
467 amino acids: PaperBLAST, CDD