GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for dctP (2-oxoglutarate TRAP transporter, solute receptor component DctP) in 2-oxoglutarate (alpha-ketoglutarate) catabolism

Or see other characterized proteins similar to dctP

Or see all steps for 2-oxoglutarate (alpha-ketoglutarate) catabolism

Or cluster curated proteins matching a keyword

Definition of dctP

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 333-339 amino acids (2/3 heteromeric)

The first sequence in each cluster is the seed.

DCTP_SHELP / A3QCW5 C4-dicarboxylate-binding periplasmic protein DctP from Shewanella loihica (strain ATCC BAA-1088 / PV-4)
Shew_1446 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component from Shewanella loihica PV-4
PFams: DctP
Heteromeric, 336 amino acids: PaperBLAST, CDD, Compare to cluster

I7END8 C4-dicarboxylate-binding periplasmic protein DctP
333 amino acids: PaperBLAST, CDD, Compare to cluster

Sama_2209 alpha-ketoglutarate TRAP transporter, solute receptor component from Shewanella amazonensis SB2B
PFams: DctP
Heteromeric, 339 amino acids: PaperBLAST, CDD, Compare to cluster