GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to boxD

Finding the characterized proteins for boxD (3,4-dehydroadipyl-CoA semialdehyde dehydrogenase) in 4-hydroxybenzoate catabolism

Or see clustering for step boxD

Or see all steps for 4-hydroxybenzoate catabolism

Or cluster curated proteins matching a keyword

Definition of boxD

Fetched 2 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 1 other characterized sequences. (Found 3 hits including self hits.)

Removing ignored items reduces this to 0 close sequences.

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for boxD.)

b1387 oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (EC 3.3.2.12; EC 1.2.1.91; EC 4.2.1.55) from Escherichia coli K-12 substr. MG1655
PAAZ_ECOLI / P77455 Bifunctional protein PaaZ; EC 3.3.2.12; EC 1.2.1.91 from Escherichia coli (strain K12)
P77455 oxepin-CoA hydrolase (EC 3.3.2.12) from Escherichia coli
P77455 oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (EC 3.3.2.12; EC 1.2.1.91; EC 4.2.1.55) from Escherichia coli (strain K12)
PFams: Aldedh, MaoC_dehydratas
681 amino acids: PaperBLAST, CDD, BRENDA::P77455
43% identical to

Q13WK4 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (NADP+) (EC 1.2.1.77) from Paraburkholderia xenovorans
PFams: Aldedh
531 amino acids: PaperBLAST, CDD