GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for catJ (3-oxoadipate CoA-transferase subunit B (CatJ)) in 4-hydroxybenzoate catabolism

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Definition of catJ

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 259-260 amino acids (1/4 heteromeric)

The first sequence in each cluster is the seed.

CATJ_PSEKB / Q8VPF2 3-oxoadipate CoA-transferase subunit B; 3-oxoadipate:succinyl-CoA transferase subunit B; Beta-ketoadipate:succinyl-CoA transferase subunit B; EC 2.8.3.6 from Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13)
Q8VPF2 3-oxoadipate CoA-transferase (subunit 1/2) (EC 2.8.3.6) from Pseudomonas knackmussii
PFams: CoA_trans
Heteromeric, 260 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_06705 3-oxoadipate CoA-transferase (EC 2.8.3.6) from Pseudomonas simiae WCS417
PFams: CoA_trans
259 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_4591 3-oxoadipate CoA-transferase (EC 2.8.3.6) from Pseudomonas fluorescens GW456-L13
PFams: CoA_trans
259 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_17200 3-oxoadipate CoA-transferase (EC 2.8.3.6) from Pseudomonas fluorescens FW300-N2E3
PFams: CoA_trans
259 amino acids: PaperBLAST, CDD, Compare to cluster