GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for ligA (protocatechuate 4,5-dioxygenase, alpha subunit) in 4-hydroxybenzoate catabolism

Or see other characterized proteins similar to ligA

Or see all steps for 4-hydroxybenzoate catabolism

Or cluster curated proteins matching a keyword

Definition of ligA

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 139-149 amino acids (heteromeric)

The first sequence in each cluster is the seed.

P22635 protocatechuate 4,5-dioxygenase alpha chain (EC from Sphingobium sp. (strain NBRC 103272 / SYK-6)
G2IQQ4 protocatechuate 4,5-dioxygenase (subunit 2/2) (EC from Sphingobium sp.
PFams: LigA
Heteromeric, 139 amino acids: PaperBLAST, CDD, Compare to cluster

Q8RNY0 protocatechuate 4,5-dioxygenase α subunit (EC; EC from Comamonas testosteroni
Q8RNY0 protocatechuate 4,5-dioxygenase (EC from Comamonas testosteroni
PFams: LigA
Heteromeric, 149 amino acids: PaperBLAST, CDD, Compare to cluster