Clusters of Characterized Proteins

Clustering the characterized proteins for ligA (protocatechuate 4,5-dioxygenase, alpha subunit) in 4-hydroxybenzoate catabolism

Or see other characterized proteins similar to ligA

Or see all steps for 4-hydroxybenzoate catabolism

Or cluster curated proteins matching a keyword

Definition of ligA

• Curated sequence MONOMER-15116: protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8). protocatechuate 4,5-dioxygenase (subunit 2/2) (EC 1.13.11.8)
• Curated sequence MONOMER-3165: protocatechuate 4,5-dioxygenase α subunit (EC 1.13.11.8; EC 1.13.11.57). protocatechuate 4,5-dioxygenase (EC 1.13.11.8)
• Ignore hits to items matching 1.13.11.8 when looking for 'other' hits

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 139-149 amino acids (heteromeric)

P22635 protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8) from Sphingobium sp. (strain NBRC 103272 / SYK-6)
G2IQQ4 protocatechuate 4,5-dioxygenase (subunit 2/2) (EC 1.13.11.8) from Sphingobium sp.
PFams: LigA
Heteromeric, 139 amino acids: PaperBLAST, CDD, Compare to cluster

Q8RNY0 protocatechuate 4,5-dioxygenase α subunit (EC 1.13.11.8; EC 1.13.11.57) from Comamonas testosteroni
Q8RNY0 protocatechuate 4,5-dioxygenase (EC 1.13.11.8) from Comamonas testosteroni
PFams: LigA
Heteromeric, 149 amino acids: PaperBLAST, CDD, Compare to cluster