GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for ligB (protocatechuate 4,5-dioxygenase, beta subunit) in 4-hydroxybenzoate catabolism

Or see other characterized proteins similar to ligB

Or see all steps for 4-hydroxybenzoate catabolism

Or cluster curated proteins matching a keyword

Definition of ligB

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 289-302 amino acids (heteromeric)

The first sequence in each cluster is the seed.

G2IQQ3 protocatechuate 4,5-dioxygenase (subunit 1/2) (EC 1.13.11.8) from Sphingobium sp.
PFams: LigB
Heteromeric, 302 amino acids: PaperBLAST, CDD, Compare to cluster

P22636 protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8) from Sphingobium sp. (strain NBRC 103272 / SYK-6)
PFams: LigB
Heteromeric, 302 amino acids: PaperBLAST, CDD, Compare to cluster

Q8RNX9 protocatechuate 4,5-dioxygenase β subunit (EC 1.13.11.8; EC 1.13.11.57) from Comamonas testosteroni
PFams: LigB
Heteromeric, 289 amino acids: PaperBLAST, CDD, Compare to cluster