GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for ligC (2-hydroxy-4-carboxymuconate-6-semialdehyde dehydrogenase) in 4-hydroxybenzoate catabolism

Or see other characterized proteins similar to ligC

Or see all steps for 4-hydroxybenzoate catabolism

Or cluster curated proteins matching a keyword

Definition of ligC

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Pseudomonas straminea

Q75T27 α-hydroxy-γ-carboxymuconate ε-semialdehyde dehydrogenase subunit (EC 1.1.1.312) from Pseudomonas straminea
PFams: GFO_IDH_MocA, Semialdhyde_dh
319 amino acids: PaperBLAST, CDD (Cluster 1)

Sphingobium (strain

LIGC_SPHSK / Q9KWL3 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; CHMS dehydrogenase; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase; EC 1.1.1.312 from Sphingobium sp. (strain NBRC 103272 / SYK-6)
Q9KWL3 LigC (EC 1.1.1.312) from Sphingobium sp. (strain NBRC 103272 / SYK-6)
PFams: GFO_IDH_MocA, F420_oxidored
315 amino acids: PaperBLAST, CDD (Cluster 1)