Clusters of Characterized Proteins

GapMind for catabolism of small carbon sources

Clusters of Characterized Proteins

Clustering the characterized proteins for ligI (2-pyrone-4,6-dicarboxylate hydrolase) in 4-hydroxybenzoate catabolism

Or see other characterized proteins similar to ligI

Or see all steps for 4-hydroxybenzoate catabolism

Or cluster curated proteins matching a keyword

Definition of ligI

Curated proteins or TIGRFams with EC 3.1.1.57

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Comamonas

D1MW98 2-pyrone-4,6-dicarboxylate lactonase (EC 3.1.1.57) from Comamonas sp.
PFams: Amidohydro_2
305 amino acids: PaperBLAST, CDD (Cluster 1)

Comamonas testosteroni

Q93PS7 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Comamonas testosteroni
LIGI_COMTE / Q93PS7 2-pyrone-4,6-dicarbaxylate hydrolase; PDC hydrolase; 2-pyrone-4,6-dicarboxylate lactonase; EC 3.1.1.57 from Comamonas testosteroni (Pseudomonas testosteroni)
PFams: Amidohydro_2
305 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas straminea

Q75T30 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Pseudomonas straminea
GI|39573668 2-pyrone-4,6-dicarboxylate lactonase from Pseudomonas straminea
PFams: Amidohydro_2
305 amino acids: PaperBLAST, CDD (Cluster 1)

Sphingobium (strain

O87170 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Sphingobium sp. (strain NBRC 103272 / SYK-6)
LIGI_SPHSK / O87170 2-pyrone-4,6-dicarboxylate hydrolase; PDC hydrolase; 2-pyrone-4,6-dicarboxylate lactonase; EC 3.1.1.57 from Sphingobium sp. (strain NBRC 103272 / SYK-6)
O87170 2-pyrone-4,6-dicarboxylate lactonase (EC 3.1.1.57) from Sphingomonas paucimobilis
GB|BAB88736.1 2-pyrone-4, 6-dicarboxylic acid hydrolase from Sphingomonas paucimobilis
PFams: Amidohydro_2
293 amino acids: PaperBLAST, CDD (Cluster 1)