GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for ligJ (4-carboxy-2-hydroxymuconate hydratase) in 4-hydroxybenzoate catabolism

Or see other characterized proteins similar to ligJ

Or see all steps for 4-hydroxybenzoate catabolism

Or cluster curated proteins matching a keyword

Definition of ligJ

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by cluster

Comamonas testosteroni

Q93PS9 4-carboxy-2-hydroxymuconate hydratase (EC from Comamonas testosteroni
Q93PS9 4-oxalomesaconate hydratase (EC from Comamonas testosteroni
PFams: Amidohydro_2
342 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas putida

GALB_PSEPK / Q88JX8 4-oxalmesaconate hydratase; OMA hydratase; Gallate degradation protein B; EC from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PFams: PIG-L
258 amino acids: PaperBLAST, CDD (Singleton 1)

Pseudomonas straminea

Q9AQI1 subunit of 4-oxalomesaconate hydratase (EC from Pseudomonas straminea
PFams: Amidohydro_2
342 amino acids: PaperBLAST, CDD (Cluster 1)

Sphingobium (strain

LIGJ_SPHSK / G2IQQ5 2-keto-4-carboxy-3-hexenedioate hydratase; KCH hydratase; EC 4.2.1.- from Sphingobium sp. (strain NBRC 103272 / SYK-6)
PFams: Amidohydro_2
341 amino acids: PaperBLAST, CDD (Cluster 1)