GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for ligU (4-oxalomesaconate tautomerase) in 4-hydroxybenzoate catabolism

Or see other characterized proteins similar to ligU

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Definition of ligU

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Novosphingobium (strain

LIGU_NOVK1 / Q0KJL4 (4E)-oxalomesaconate Delta-isomerase; OMA isomerase; 1,3-allylic isomerase LigU; EC 5.3.3.- from Novosphingobium sp. (strain KA1) (Sphingomonas sp. (strain KA1))
PFams: PrpF
357 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas putida

GALD_PSEPK / Q88JY0 4-oxalomesaconate tautomerase; Gallate degradation protein D; EC 5.3.2.8 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Q88JY0 4-oxalomesaconate tautomerase (EC 5.3.2.8) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PFams: PrpF
361 amino acids: PaperBLAST, CDD (Cluster 1)