GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for pcaB (3-carboxymuconate cycloisomerase) in 4-hydroxybenzoate catabolism

Or see other characterized proteins similar to pcaB

Or see all steps for 4-hydroxybenzoate catabolism

Or cluster curated proteins matching a keyword

Definition of pcaB

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Agrobacterium tumefaciens

Q2HNZ1 3-Carboxy-cis,cis-muconate cycloisomerase (EC from Agrobacterium tumefaciens
PFams: Lyase_1
353 amino acids: PaperBLAST, CDD (Cluster 1)

Hydrogenophaga intermedia

Q2HNY9 3-carboxymuconate lactonizing enzyme type 2 (EC from Hydrogenophaga intermedia
PFams: Lyase_1
453 amino acids: PaperBLAST, CDD (Cluster 1)

Organism unknown

A0A0C4YE08 3-carboxy-cis,cis-muconate cycloisomerase; EC=
470 amino acids: PaperBLAST, CDD (Cluster 1)