GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for pcaC (4-carboxymuconolactone decarboxylase) in 4-hydroxybenzoate catabolism

Or see other characterized proteins similar to pcaC

Or see all steps for 4-hydroxybenzoate catabolism

Or cluster curated proteins matching a keyword

Definition of pcaC

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 118-136 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q6SJA7 4-carboxymuconolactone decarboxylase (EC from Sulfitobacter sp.
PFams: CMD
118 amino acids: PaperBLAST, CDD, Compare to cluster

Q6SJB9 4-carboxymuconolactone decarboxylase (EC from Ruegeria pomeroyi
PFams: CMD
125 amino acids: PaperBLAST, CDD, Compare to cluster

Q6SJC5 4-carboxymuconolactone decarboxylase (EC from Roseovarius nubinhibens ISM
PFams: CMD
136 amino acids: PaperBLAST, CDD, Compare to cluster

Q9L5B1 4-carboxymuconolactone decarboxylase (EC from Sagittula stellata E-37
PFams: CMD
130 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

A2FEX8 4-carboxymuconolactone decarboxylase (EC from Trichomonas vaginalis
PFams: CMD
233 amino acids: PaperBLAST, CDD

Q0SH24 3-oxoadipate enol-lactonase (EC; 4-carboxymuconolactone decarboxylase (EC from Rhodococcus jostii
PFams: Abhydrolase_1, Abhydrolase_6, Hydrolase_4, Ndr, CMD
400 amino acids: PaperBLAST, CDD