GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for pcaG (protocatechuate 3,4-dioxygenase, beta subunit) in 4-hydroxybenzoate catabolism

Or see other characterized proteins similar to pcaG

Or see all steps for 4-hydroxybenzoate catabolism

Or cluster curated proteins matching a keyword

Definition of pcaG

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 7 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 237-246 amino acids (5/7 heteromeric)

The first sequence in each cluster is the seed.

A0A193DXP2 protocatechuate 3,4-dioxygenase (subunit 1/2) (EC 1.13.11.3) from Rhizobium sp. LMB-1
PFams: PCDO_beta_N, Dioxygenase_C
Heteromeric, 246 amino acids: PaperBLAST, CDD, Compare to cluster

A8I4B3 protocatechuate 3,4-dioxygenase (EC 1.13.11.3) from Chromohalobacter sp.
PFams: PCDO_beta_N, Dioxygenase_C
246 amino acids: PaperBLAST, CDD, Compare to cluster

I0DHJ1 protocatechuate 3,4-dioxygenase (subunit 1/2) (EC 1.13.11.3) from Stenotrophomonas maltophilia
PFams: PCDO_beta_N, Dioxygenase_C
Heteromeric, 239 amino acids: PaperBLAST, CDD, Compare to cluster

Q0SH27 protocatechuate 3,4-dioxygenase (subunit 2/2) (EC 1.13.11.3) from Rhodococcus jostii
PFams: PCDO_beta_N, Dioxygenase_C
Heteromeric, 237 amino acids: PaperBLAST, CDD, Compare to cluster

RF|YP_046375.1 protocatechuate 3,4-dioxygenase, beta chain; EC 1.13.11.3 from Acinetobacter sp. ADP1
PFams: PCDO_beta_N, Dioxygenase_C
241 amino acids: PaperBLAST, CDD, Compare to cluster

Q93PS2 protocatechuate 3,4-dioxygenase type II β subunit (EC 1.13.11.3) from Hydrogenophaga intermedia
PFams: PCDO_beta_N, Dioxygenase_C
Heteromeric, 241 amino acids: PaperBLAST, CDD, Compare to cluster

P00437 protocatechuate 3,4-dioxygenase β subunit (EC 1.13.11.3) from Pseudomonas putida
PFams: PCDO_beta_N, Dioxygenase_C
Heteromeric, 239 amino acids: PaperBLAST, CDD, Compare to cluster