GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for pcaH (protocatechuate 3,4-dioxygenase, alpha subunit) in 4-hydroxybenzoate catabolism

Or see other characterized proteins similar to pcaH

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Or cluster curated proteins matching a keyword

Definition of pcaH

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 7 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 195-213 amino acids (5/7 heteromeric)

The first sequence in each cluster is the seed.

A0A193DXA9 protocatechuate 3,4-dioxygenase (subunit 2/2) (EC 1.13.11.3) from Rhizobium sp. LMB-1
PFams: Dioxygenase_C
Heteromeric, 206 amino acids: PaperBLAST, CDD, Compare to cluster

A8I4B7 protocatechuate 3,4-dioxygenase (EC 1.13.11.3) from Chromohalobacter sp.
PFams: Dioxygenase_C
210 amino acids: PaperBLAST, CDD, Compare to cluster

I0DHJ0 protocatechuate 3,4-dioxygenase (subunit 2/2) (EC 1.13.11.3) from Stenotrophomonas maltophilia
PFams: Dioxygenase_C
Heteromeric, 201 amino acids: PaperBLAST, CDD, Compare to cluster

Q0SH26 protocatechuate 3,4-dioxygenase (subunit 1/2) (EC 1.13.11.3) from Rhodococcus jostii
PFams: Dioxygenase_C
Heteromeric, 213 amino acids: PaperBLAST, CDD, Compare to cluster

RF|YP_046376.1 protocatechuate 3,4-dioxygenase, alpha chain; EC 1.13.11.3 from Acinetobacter sp. ADP1
PFams: Dioxygenase_C
209 amino acids: PaperBLAST, CDD, Compare to cluster

Q93PS1 protocatechuate 3,4-dioxygenase type II α subunit (EC 1.13.11.3) from Hydrogenophaga intermedia
PFams: Dioxygenase_C
Heteromeric, 195 amino acids: PaperBLAST, CDD, Compare to cluster

P00436 protocatechuate 3,4-dioxygenase α subunit (EC 1.13.11.3) from Pseudomonas putida
PFams: Dioxygenase_C
Heteromeric, 201 amino acids: PaperBLAST, CDD, Compare to cluster