GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for praD (2-oxohex-3-enedioate decarboxylase) in 4-hydroxybenzoate catabolism

Or see other characterized proteins similar to praD

Or see all steps for 4-hydroxybenzoate catabolism

Or cluster curated proteins matching a keyword

Definition of praD

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 7 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 251-267 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

B0VXM8 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Geobacillus stearothermophilus
PFams: FAA_hydrolase
267 amino acids: PaperBLAST, CDD, Compare to cluster

Q1XGK3 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Pseudomonas putida
264 amino acids: PaperBLAST, CDD, Compare to cluster

AMNE_PSESP / Q9KWS3 4-oxalocrotonate decarboxylase; EC 4.1.1.77 from Pseudomonas sp.
Q9KWS3 4-oxalocrotonate decarboxylase monomer (EC 4.1.1.77) from Pseudomonas sp.
PFams: FAA_hydrolase
256 amino acids: PaperBLAST, CDD, Compare to cluster

P49155 4-oxalocrotonate decarboxylase subunit (EC 4.1.1.77) from Pseudomonas putida
PFams: FAA_hydrolase
264 amino acids: PaperBLAST, CDD, Compare to cluster

Q83V28 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Pseudomonas fluorescens
PFams: FAA_hydrolase
251 amino acids: PaperBLAST, CDD, Compare to cluster

Q38M37 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Comamonas testosteroni CNB-1
PFams: FAA_hydrolase
262 amino acids: PaperBLAST, CDD, Compare to cluster

C4TP06 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Paenibacillus sp. JJ-1b
PFams: FAA_hydrolase
260 amino acids: PaperBLAST, CDD, Compare to cluster