GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for xylF (2-hydroxymuconate semialdehyde hydrolase) in 4-hydroxybenzoate catabolism

Or see other characterized proteins similar to xylF

Or see all steps for 4-hydroxybenzoate catabolism

Or cluster curated proteins matching a keyword

Definition of xylF

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Pseudomonas

G3KFX4 2-hydroxymuconate-6-semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas sp.
PFams: Abhydrolase_1, Abhydrolase_6, Hydrolase_4
282 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas putida

XYLF_PSEPU / P23106 2-hydroxymuconate semialdehyde hydrolase; HMSH; 2-hydroxymuconic semialdehyde hydrolase; EC 3.7.1.9 from Pseudomonas putida (Arthrobacter siderocapsulatus)
P23106 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas putida
PFams: Abhydrolase_1, Abhydrolase_6, Hydrolase_4
281 amino acids: PaperBLAST, CDD (Cluster 1)