GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for glcD (D-lactate dehydrogenase, FAD-linked subunit 1 (GlcD)) in D-lactate catabolism

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Definition of glcD

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 479-499 amino acids (heteromeric)

The first sequence in each cluster is the seed.

b2979 glycolate dehydrogenase, putative FAD-linked subunit (EC 1.1.99.14) from Escherichia coli K-12 substr. MG1655
GLCD_ECOLI / P0AEP9 Glycolate oxidase subunit GlcD; Glycolate dehydrogenase subunit GlcD; EC 1.1.99.14 from Escherichia coli (strain K12)
P0AEP9 glycolate dehydrogenase, putative FAD-linked subunit (EC 1.1.99.14) from Escherichia coli (strain K12)
RF|NP_417453 glycolate oxidase subunit glcD from Escherichia coli K12
PFams: FAD_binding_4, FAD-oxidase_C
Heteromeric, 499 amino acids: PaperBLAST, CDD, Compare to cluster

RR42_RS17300 D-lactate oxidase, FAD-linked subunit (EC 1.1.3.15) from Cupriavidus basilensis 4G11
PFams: FAD_binding_4, FAD-oxidase_C
Heteromeric, 497 amino acids: PaperBLAST, CDD, Compare to cluster

PGA1_c29720 D-lactate oxidase, FAD-linked subunit (EC 1.1.3.15) from Phaeobacter inhibens BS107
PFams: FAD_binding_4, FAD-oxidase_C
Heteromeric, 482 amino acids: PaperBLAST, CDD, Compare to cluster

SMc00832 D-lactate oxidase, FAD-linked subunit (EC 1.1.3.15) from Sinorhizobium meliloti 1021
PFams: FAD_binding_4, FAD-oxidase_C
Heteromeric, 479 amino acids: PaperBLAST, CDD, Compare to cluster

Psest_3841 D-lactate oxidase and glycolate oxidase, FAD-linked subunit (EC 1.1.3.15) from Pseudomonas stutzeri RCH2
PFams: FAD_binding_4, FAD-oxidase_C
Heteromeric, 499 amino acids: PaperBLAST, CDD, Compare to cluster