GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for glcF (D-lactate dehydrogenase, FeS subunit GlcF) in D-lactate catabolism

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Definition of glcF

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 405-444 amino acids (heteromeric)

The first sequence in each cluster is the seed.

b4467 glycolate dehydrogenase, putative iron-sulfur subunit (EC 1.1.99.14) from Escherichia coli K-12 substr. MG1655
GLCF_ECOLI / P52074 Glycolate oxidase iron-sulfur subunit; Glycolate dehydrogenase subunit GlcF; Glycolate oxidase subunit GlcF; EC 1.1.99.14 from Escherichia coli (strain K12)
P52074 glycolate dehydrogenase, putative iron-sulfur subunit (EC 1.1.99.14) from Escherichia coli (strain K12)
RF|YP_026190.1 glycolate oxidase, iron-sulfur subunit from Escherichia coli K12
PFams: Fer4_8, Fer4_17, Fer4_4, Fer4_7, Fer4_4, CCG, CCG
Heteromeric, 407 amino acids: PaperBLAST, CDD, Compare to cluster

RR42_RS17315 D-lactate oxidase, iron-sulfur subunit (EC 1.1.3.15) from Cupriavidus basilensis 4G11
PFams: Fer4_17, Fer4_4, Fer4_7, Fer4_8, Fer4_4, CCG, CCG
Heteromeric, 421 amino acids: PaperBLAST, CDD, Compare to cluster

PGA1_c29700 D-lactate oxidase, iron-sulfur subunit (EC 1.1.3.15) from Phaeobacter inhibens BS107
PFams: Fer4_8, Fer4_10, Fer4_4, Fer4_7, Fer4_17, Fer4_4, CCG, CCG
Heteromeric, 444 amino acids: PaperBLAST, CDD, Compare to cluster

SMc00926 D-lactate oxidase, iron-sulfur subunit (EC 1.1.3.15) from Sinorhizobium meliloti 1021
PFams: Fer4_8, Fer4_10, Fer4_17, Fer4_4, Fer4_7, CCG, CCG
Heteromeric, 443 amino acids: PaperBLAST, CDD, Compare to cluster

Psest_3839 D-lactate oxidase and glycolate oxidase, iron-sulfur subunit (EC 1.1.3.15) from Pseudomonas stutzeri RCH2
PFams: Fer4_8, Fer4_7, Fer4_17, CCG, CCG
Heteromeric, 405 amino acids: PaperBLAST, CDD, Compare to cluster