GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for lctP (D-lactate:H+ symporter LctP or LidP) in D-lactate catabolism

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Definition of lctP

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 551-564 amino acids (not heteromeric)

b3603 lactate/glycolate:H+ symporter LldP from Escherichia coli K-12 substr. MG1655
LLDP_ECOLI / P33231 L-lactate permease from Escherichia coli (strain K12)
TC 2.A.14.1.1 / P33231 Lactate permease, LctP or LidP (substrates: L-lactate, D-lactate and glycolate) from Escherichia coli
P33231 lactate/glycolate:H+ symporter LldP from Escherichia coli (strain K12)
b3603 (R)-lactate / (S)-lactate / glycolate:H+ symporter LldP from Escherichia coli BW25113
PFams: Lactate_perm
551 amino acids: PaperBLAST, CDD, Compare to cluster

b2975 glycolate/lactate:H+ symporter GlcA from Escherichia coli K-12 substr. MG1655
TC 2.A.14.1.2 / Q46839 Glycolate permease, GlcA or YghK (substrates: L-lactate, D-lactate and glycolate) from Escherichia coli
Q46839 glycolate/lactate:H+ symporter GlcA from Escherichia coli (strain K12)
PFams: Lactate_perm
560 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_24105 D-lactate transporter (lctP family) from Pseudomonas simiae WCS417
PFams: Lactate_perm
564 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_07550 L-lactate and D-lactate permease (lctP family) from Pseudomonas fluorescens FW300-N2C3
PFams: Lactate_perm
564 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 547-564 amino acids (not heteromeric)

L0GFN1 L-lactate permease {ECO:0000256|RuleBase:RU365092}
564 amino acids: PaperBLAST, CDD, Compare to cluster

Q8EGS2 L-lactate permease {ECO:0000256|RuleBase:RU365092}
547 amino acids: PaperBLAST, CDD, Compare to cluster