GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for dsdA (D-serine ammonia-lyase) in D-serine catabolism

Or see other characterized proteins similar to dsdA

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Definition of dsdA

Fetched 17 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 16 of these sequences

Found 3 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 433-450 amino acids (not heteromeric)

b2366 D-serine ammonia-lyase (EC 4.3.1.18) from Escherichia coli K-12 substr. MG1655
SDHD_ECOLI / P00926 D-serine dehydratase; D-serine deaminase; DSD; EC 4.3.1.18 from Escherichia coli (strain K12)
P00926 D-Serine ammonia-lyase (EC 4.3.1.18) from Escherichia coli
P00926 D-serine ammonia-lyase (EC 4.3.1.18) from Escherichia coli (strain K12)
PFams: PALP
442 amino acids: PaperBLAST, CDD, Compare to cluster

Q4A041 D-Serine ammonia-lyase (EC 4.3.1.18) from Staphylococcus saprophyticus
PFams: PALP
433 amino acids: PaperBLAST, CDD, Compare to cluster

Q8ZL08 D-Serine ammonia-lyase (EC 4.3.1.18) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: PALP
440 amino acids: PaperBLAST, CDD, Compare to cluster

Q9HYN9 D-Serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas aeruginosa
PFams: PALP
448 amino acids: PaperBLAST, CDD, Compare to cluster

SDHD_ECOL6 / Q8FFF4 D-serine dehydratase; D-serine deaminase; DSD; EC 4.3.1.18 from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
PFams: PALP
442 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_3648 D-serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas fluorescens GW456-L13
PFams: PALP
450 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_25210 D-serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas fluorescens FW300-N2E3
PFams: PALP
450 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 323-340 amino acids (not heteromeric)

SRR_SCHPO / O59791 Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
O59791 serine racemase (EC 5.1.1.18) from Schizosaccharomyces pombe
PFams: PALP
323 amino acids: PaperBLAST, CDD, Compare to cluster

SRR_ARATH / Q2PGG3 Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana (Mouse-ear cress)
Q2PGG3 serine racemase (EC 5.1.1.18) from Arabidopsis thaliana
Q2PGG3 serine racemase (EC 5.1.1.18) from Arabidopsis thaliana
PFams: PALP
331 amino acids: PaperBLAST, CDD, Compare to cluster

Q54HH2 D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum
PFams: PALP
324 amino acids: PaperBLAST, CDD, Compare to cluster

SRR_RAT / Q76EQ0 Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus (Rat)
Q76EQ0 serine racemase (EC 5.1.1.18) from Rattus norvegicus
PFams: PALP
333 amino acids: PaperBLAST, CDD, Compare to cluster

SRR_HUMAN / Q9GZT4 Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens (Human)
Q9GZT4 serine racemase (EC 5.1.1.18) from Homo sapiens
Q9GZT4 Serine racemase (EC 5.1.1.18) from Homo sapiens
PFams: PALP
340 amino acids: PaperBLAST, CDD, Compare to cluster

SRR_MOUSE / Q9QZX7 Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Mus musculus (Mouse)
Q9QZX7 serine racemase (EC 5.1.1.18) from Mus musculus
PFams: PALP
339 amino acids: PaperBLAST, CDD, Compare to cluster

SRR_ORYSJ / Q7XSN8 Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Oryza sativa subsp. japonica (Rice)
Q7XSN8 serine racemase (EC 5.1.1.18) from Oryza sativa
PFams: PALP
339 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 415-428 amino acids (not heteromeric)

DSD1_YEAST / P53095 D-serine dehydratase; D-serine deaminase; DSD; EC 4.3.1.18 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
P53095 D-Serine ammonia-lyase (EC 4.3.1.18) from Saccharomyces cerevisiae
PFams: Ala_racemase_N, D-ser_dehydrat
428 amino acids: PaperBLAST, CDD, Compare to cluster

DSD1_SCHPO / Q9US35 D-serine dehydratase; D-serine deaminase; DSD; EC 4.3.1.18 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
PFams: Ala_racemase_N, D-ser_dehydrat
415 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

O57809 L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii
PFams: PALP
325 amino acids: PaperBLAST, CDD