GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for dsdX (D-serine transporter DsdX) in D-serine catabolism

Or see other characterized proteins similar to dsdX

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Definition of dsdX

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 445-445 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

DSDX_ECOL6 / A0A0H2VAP9 D-serine transporter DsdX; D-serine-specific permease from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
PFams: GntP_permease, CitMHS
445 amino acids: PaperBLAST, CDD, Compare to cluster

b2365 D-serine transporter from Escherichia coli K-12 substr. MG1655
DSDX_ECOLI / P08555 D-serine transporter DsdX from Escherichia coli (strain K12)
TC 2.A.8.1.5 / P08555 The D-serine transporter, DsdX (KM=60µM) (may also transport D-threonine which inhibits D-serine uptake) (Anfora and Welch, 2006). Eliminating the dsdX gene renders the cell more sensitive to chloramphenicol from Escherichia coli (strain K12)
PFams: GntP_permease, CitMHS
445 amino acids: PaperBLAST, CDD, Compare to cluster