Other Characterized Proteins Similar to dctM

Finding the characterized proteins for dctM (L-malate TRAP transporter, large permease component DctM) in L-malate catabolism

Or see clustering for step dctM

Or see all steps for L-malate catabolism

Or cluster curated proteins matching a keyword

Definition of dctM

• Curated sequence O07838: C4-dicarboxylate TRAP transporter large permease protein DctM. DctM, component of Tripartite dicarboxylate:H+ symporter (substrates include: fumarate, D- and L-malate, succinate, succinamide, orotate, iticonate and mesaconate)
• Curated sequence 5208943: dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component
• Curated sequence Q9HU16: C4-dicarboxylate TRAP transporter large permease protein DctM
• UniProt sequence I7DRS6: SubName: Full=TRAP transporter, subunit DctM {ECO:0000313|EMBL:AFO91751.1};
• Ignore hits to 6938090 when looking for 'other' hits (alpha-ketoglutarate TRAP transporter, large permease component)
• Comment: 3-component TRAP transporter dctMPQ. In Phaeobacter inhibens, the system is important for L-malate utilization: PGA1_c20660 = dctM = I7DRS6; PGA1_c20680 = dctP = I7END8; PGA1_c20670 = dctQ = I7EY26. A very similar system is present in Shewanella amazonensis SB2B, which cannot grow on L-malate; it is still possible that this system transports L-malate, so it is marked ignore.

Fetched 4 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 1 other characterized sequences. (Found 4 hits including self hits.)

Removing ignored items reduces this to 0 close sequences.

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for dctM.)

Sama_2211 alpha-ketoglutarate TRAP transporter, large permease component from Shewanella amazonensis SB2B
PFams: DctM
Heteromeric, 466 amino acids: PaperBLAST, CDD, reanno::SB2B:6938090
89% identical to

Shew_1444 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component from Shewanella loihica PV-4
PFams: DctM
Heteromeric, 465 amino acids: PaperBLAST, CDD