GapMind for catabolism of small carbon sources


Other Characterized Proteins Similar to dctM

Finding the characterized proteins for dctM (L-malate TRAP transporter, large permease component DctM) in L-malate catabolism

Or see clustering for step dctM

Or see all steps for L-malate catabolism

Or cluster curated proteins matching a keyword

Definition of dctM

Fetched 4 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 1 other characterized sequences. (Found 4 hits including self hits.)

Removing ignored items reduces this to 0 close sequences.

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for dctM.)

Sama_2211 alpha-ketoglutarate TRAP transporter, large permease component from Shewanella amazonensis SB2B
PFams: DctM
Heteromeric, 466 amino acids: PaperBLAST, CDD, reanno::SB2B:6938090
89% identical to

Shew_1444 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component from Shewanella loihica PV-4
PFams: DctM
Heteromeric, 465 amino acids: PaperBLAST, CDD