GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for dctP (L-malate TRAP transporter, substrate-binding component DctP) in L-malate catabolism

Or see other characterized proteins similar to dctP

Or see all steps for L-malate catabolism

Or cluster curated proteins matching a keyword

Definition of dctP

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Organism unknown

I7END8 C4-dicarboxylate-binding periplasmic protein DctP
333 amino acids: PaperBLAST, CDD (Cluster 1)

Q9HVH5 Probable c4-dicarboxylate-binding protein
332 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas aeruginosa

DCTP_PSEAE / Q9HU18 C4-dicarboxylate-binding periplasmic protein DctP from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: DctP
331 amino acids: PaperBLAST, CDD (Cluster 1)

Rhodobacter capsulatus

DCTP_RHOCA / P37735 C4-dicarboxylate-binding periplasmic protein DctP from Rhodobacter capsulatus (Rhodopseudomonas capsulata)
TC 2.A.56.1.1 / P37735 DctP, component of Tripartite dicarboxylate:H+ symporter (substrates include: fumarate, D- and L-malate, succinate, succinamide, orotate, iticonate and mesaconate) from Rhodobacter capsulatus (Rhodopseudomonas capsulata)
PFams: DctP
Heteromeric, 333 amino acids: PaperBLAST, CDD (Cluster 1)

Shewanella loihica

Shew_1446 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component from Shewanella loihica PV-4
DCTP_SHELP / A3QCW5 C4-dicarboxylate-binding periplasmic protein DctP from Shewanella loihica (strain ATCC BAA-1088 / PV-4)
PFams: DctP
Heteromeric, 336 amino acids: PaperBLAST, CDD (Cluster 1)

Vibrio cholerae

DCTP_VIBCH / Q9KQR9 C4-dicarboxylate-binding periplasmic protein DctP from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
PFams: DctP
332 amino acids: PaperBLAST, CDD (Cluster 1)