GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for SMc02869 (N-acetylglucosamine ABC transporter, ATPase component) in N-acetyl-D-glucosamine catabolism

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Definition of SMc02869

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 331-352 amino acids (heteromeric)

The first sequence in each cluster is the seed.

PGA1_c27970 N-Acetyl-D-glucosamine ABC transport system, ATPase component from Phaeobacter inhibens BS107
PFams: ABC_tran, TOBE_2
Heteromeric, 331 amino acids: PaperBLAST, CDD, Compare to cluster

SMc02869 N-Acetyl-D-glucosamine ABC transport system, ATPase component from Sinorhizobium meliloti 1021
PFams: ABC_tran, TOBE_2
Heteromeric, 352 amino acids: PaperBLAST, CDD, Compare to cluster