GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for nag3 (N-acetylglucosamine transporter nag3/nag4) in N-acetyl-D-glucosamine catabolism

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Definition of nag3

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 561-581 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

NAG3_CANAL / A0A1D8PQG0 Major facilitator superfamily multidrug transporter NAG3; Multidrug resistance protein 97; N-acetylglucosamine utilization protein 3; Transmembrane protein 1 from Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast)
PFams: MFS_1, Sugar_tr
561 amino acids: PaperBLAST, CDD, Compare to cluster

NAG4_CANAL / Q59RG0 Major facilitator superfamily multidrug transporter NAG4; N-acetylglucosamine utilization protein 4; Transmembrane protein 2 from Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast)
CH_123435 potential polyamine transporter from Candida albicans
PFams: MFS_1, TRI12, Sugar_tr
581 amino acids: PaperBLAST, CDD, Compare to cluster