GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for nagEcb (N-acetylglucosamine phosphotransferase system, EII-CB components) in N-acetyl-D-glucosamine catabolism

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Definition of nagEcb

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 570-591 amino acids (heteromeric)

The first sequence in each cluster is the seed.

TC 4.A.1.1.15 / Q9HXN4 N-Acetyl-D-Glucosamine phosphotransferase system transporter, component of N-acetyl glucosamine-specific PTS permease, GlcNAc IIBC/GlcNAc I-HPr-IIA from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
PFams: PTS_EIIC, PTS_EIIB, PTS_EIIB
Heteromeric, 570 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS02745 N-acetylglucosamine-specific PTS system, IIBC components (nagE) from Burkholderia phytofirmans PsJN
PFams: PTS_EIIC, PTS_EIIB, PTS_EIIB
Heteromeric, 591 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_04465 N-acetylglucosamine-specific PTS system, IIBC components (nagE) from Pseudomonas fluorescens FW300-N2E3
PFams: PTS_EIIC, PTS_EIIB, PTS_EIIB
Heteromeric, 571 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_17535 N-acetylglucosamine-specific PTS system, IIBC components (nagE) from Pseudomonas fluorescens FW300-N2C3
PFams: PTS_EIIC, PTS_EIIB, PTS_EIIB
Heteromeric, 571 amino acids: PaperBLAST, CDD, Compare to cluster