GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for nagF (N-acetylglucosamine phosphotransferase system, E-I, Hpr, and EII-A components (NagF)) in N-acetyl-D-glucosamine catabolism

Or see other characterized proteins similar to nagF

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Definition of nagF

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 837-854 amino acids (heteromeric)

The first sequence in each cluster is the seed.

TC 4.A.1.1.15 / Q9HXN5 N-Acetyl-D-Glucosamine phosphotransferase system transporter, component of N-acetyl glucosamine-specific PTS permease, GlcNAc IIBC/GlcNAc I-HPr-IIA from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
PFams: PTS_EIIA_1, PTS-HPr, PEP-utilisers_N, PEP-utilizers, PEP-utilizers_C
Heteromeric, 842 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS02740 N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) from Burkholderia phytofirmans PsJN
PFams: PTS_EIIA_1, PTS-HPr, PEP-utilisers_N, PEP-utilizers, PEP-utilizers_C
Heteromeric, 854 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_04460 N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) from Pseudomonas fluorescens FW300-N2E3
PFams: PTS_EIIA_1, PTS-HPr, PEP-utilisers_N, PEP-utilizers, PEP-utilizers_C
Heteromeric, 838 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_17540 N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) from Pseudomonas fluorescens FW300-N2C3
PFams: PTS_EIIA_1, PTS-HPr, PEP-utilisers_N, PEP-utilizers, PEP-utilizers_C
Heteromeric, 837 amino acids: PaperBLAST, CDD, Compare to cluster