GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for nagK (N-acetylglucosamine kinase) in N-acetyl-D-glucosamine catabolism

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Definition of nagK

Fetched 18 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 14 of these sequences

Found 4 clusters of similar sequences. Another 4 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 294-302 amino acids (not heteromeric)

SO3507 N-acetylglucosamine kinase (EC 2.7.1.59) from Shewanella oneidensis MR-1
PFams: BcrAD_BadFG
300 amino acids: PaperBLAST, CDD, Compare to cluster

Shewana3_3114 N-acetylglucosamine kinase (EC 2.7.1.59) from Shewanella sp. ANA-3
PFams: BcrAD_BadFG
302 amino acids: PaperBLAST, CDD, Compare to cluster

Shew_1116 N-acetylglucosamine kinase (EC 2.7.1.59) from Shewanella loihica PV-4
PFams: BcrAD_BadFG
299 amino acids: PaperBLAST, CDD, Compare to cluster

PGA1_c27910 N-acetylglucosamine kinase (EC 2.7.1.59) from Phaeobacter inhibens BS107
PFams: BcrAD_BadFG
300 amino acids: PaperBLAST, CDD, Compare to cluster

Sama_0944 N-acetylglucosamine kinase (EC 2.7.1.59) from Shewanella amazonensis SB2B
PFams: BcrAD_BadFG
301 amino acids: PaperBLAST, CDD, Compare to cluster

SMc02875 N-acetylglucosamine kinase (EC 2.7.1.59) from Sinorhizobium meliloti 1021
PFams: BcrAD_BadFG
294 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 303-308 amino acids (not heteromeric)

b1119 N-acetyl-D-glucosamine kinase (EC 2.7.1.59) from Escherichia coli K-12 substr. MG1655
NAGK_ECOLI / P75959 N-acetyl-D-glucosamine kinase; GlcNAc kinase; EC 2.7.1.59 from Escherichia coli (strain K12)
P75959 N-acetyl-D-glucosamine kinase (EC 2.7.1.59) from Escherichia coli (strain K12)
GB|ABB62126.1 N-acetyl-D-glucosamine kinase; EC 2.7.1.59 from Escherichia coli K12
PFams: ROK, Glucokinase
303 amino acids: PaperBLAST, CDD, Compare to cluster

AGAK_SHESA / A0KYQ6 N-acetylgalactosamine kinase AgaK; GalNAc kinase; N-acetylglucosamine kinase; GlcNAc kinase; EC 2.7.1.-; EC 2.7.1.59 from Shewanella sp. (strain ANA-3)
A0KYQ6 N-acetylgalactosamine kinase from Shewanella sp. (strain ANA-3)
PFams: ROK, Glucokinase
308 amino acids: PaperBLAST, CDD, Compare to cluster

NAGK_SALTY / Q8ZPZ9 N-acetyl-D-glucosamine kinase; GlcNAc kinase; EC 2.7.1.59 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: ROK, Glucokinase
303 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 343-344 amino acids (not heteromeric)

NAGK_RAT / P81799 N-acetyl-D-glucosamine kinase; N-acetylglucosamine kinase; GlcNAc kinase; EC 2.7.1.59 from Rattus norvegicus (Rat)
PFams: BcrAD_BadFG
343 amino acids: PaperBLAST, CDD, Compare to cluster

NAGK_MOUSE / Q9QZ08 N-acetyl-D-glucosamine kinase; N-acetylglucosamine kinase; GlcNAc kinase; EC 2.7.1.59 from Mus musculus (Mouse)
Q9QZ08 N-acetylglucosamine kinase (EC 2.7.1.59) from Mus musculus
PFams: BcrAD_BadFG
343 amino acids: PaperBLAST, CDD, Compare to cluster

NAGK_HUMAN / Q9UJ70 N-acetyl-D-glucosamine kinase; N-acetylglucosamine kinase; GlcNAc kinase; EC 2.7.1.59 from Homo sapiens (Human)
Q9UJ70 N-acetylglucosamine kinase (EC 2.7.1.59) from Homo sapiens
PFams: BcrAD_BadFG
344 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 4 338-344 amino acids (not heteromeric)

Q8P6M4 Glucose kinase
344 amino acids: PaperBLAST, CDD, Compare to cluster

Q8P6S9 Glucose kinase
338 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/4 heteromeric)

HXK1_CANAL / Q59RW5 N-acetylglucosamine kinase 1; GlcNAc kinase 1; Hexokinase 1; EC 2.7.1.59; EC 2.7.1.1 from Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast)
PFams: Hexokinase_1, Hexokinase_2
493 amino acids: PaperBLAST, CDD

MURK_CLOAB / Q97ML3 N-acetylmuramic acid/N-acetylglucosamine kinase; MurNAc/GlcNAc kinase; Murein sugar kinase; EC 2.7.1.-; EC 2.7.1.59 from Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
PFams: BcrAD_BadFG
306 amino acids: PaperBLAST, CDD

Q5GBH5 N-acetylglucosamine kinase (EC 2.7.1.59) from Bacteroides fragilis
PFams: ROK
326 amino acids: PaperBLAST, CDD

CA265_RS11300 N-acetylglucosamine kinase (EC 2.7.1.59) from Pedobacter sp. GW460-11-11-14-LB5
PFams: ROK
313 amino acids: PaperBLAST, CDD