GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for actP (cation/acetate symporter ActP) in acetate catabolism

Or see other characterized proteins similar to actP

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Or cluster curated proteins matching a keyword

Definition of actP

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 549-578 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b4067 acetate/glycolate:cation symporter from Escherichia coli K-12 substr. MG1655
P32705 acetate/glycolate:cation symporter from Escherichia coli (strain K12)
ACTP_ECOLI / P32705 Cation/acetate symporter ActP; Acetate permease; Acetate transporter ActP from Escherichia coli (strain K12)
TC 2.A.21.7.2 / P32705 Acetate/glyoxylate permease, ActP from Escherichia coli
PFams: SSF
549 amino acids: PaperBLAST, CDD, Compare to cluster

MCTC_CORGL / Q8NS49 Monocarboxylic acid transporter from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
TC 2.A.21.7.3 / Q8NS49 Pyruvate/acetate/propionate: H+ symporter, MctC (DhlC; cg0953) from Corynebacterium glutamicum
PFams: SSF
551 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.21.7.5 / D5APM1 Acetate permease ActP-2/ActP2/ActP3 from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
PFams: SSF
578 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.21.7.4 / D5AU53 Acetate uptake permease, ActP1; also takes up tellurite from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
PFams: SSF
551 amino acids: PaperBLAST, CDD, Compare to cluster