Clusters of Characterized Proteins

Clustering the characterized proteins for dctA (organic acid/proton symporter DctA) in acetate catabolism

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Definition of dctA

• Curated sequence Q848I3: Organic acid uptake porter, DctA of 444 aas and 8 - 10 putative TMSs
• Ignore hits to Q9I4F5 when looking for 'other' hits (C4-dicarboxylate transport protein 2)
• Ignore hits to AO356_18980 when looking for 'other' hits (sodium:C4-dicarboxylate symporter (dctA))
• Comment: A mutant in P. chlororaphis is reported to be defective in acetate utilization, implying uptake. Fitness data for various strains of P. fluorescens did not indicate this, but uptake could be redundant; for the ortholog in P. aeruginosa (Q9I4F5), acetate does not seem to have been considered as a potential substrate

Fetched 1 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 0 of these sequences

Found 0 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by cluster

Pseudomonas chlororaphis

TC 2.A.23.1.10 / Q848I3 Organic acid uptake porter, DctA of 444 aas and 8 - 10 putative TMSs from Pseudomonas chlororaphis
PFams: SDF
444 amino acids: PaperBLAST, CDD (Singleton 1)