GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for deh (acetate/haloacid transporter) in acetate catabolism

Or see other characterized proteins similar to deh

Or see all steps for acetate catabolism

Or cluster curated proteins matching a keyword

Definition of deh

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 552-552 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

TC 2.A.1.6.11 / F8SVK1 Acetate/haloacid transporter, Dehp2, with a possible atypical topology from Burkholderia sp. MBA4
PFams: Sugar_tr, MFS_1, Sugar_tr
552 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.1.6.8 / Q7X4L6 The acetate/monochloroacetate (haloacid) permease, Deh4p (Km = 5.5 mμM for acetate; 9 mμM for monochloroacetate) from Burkholderia cepacia
PFams: Sugar_tr, MFS_1, Sugar_tr
552 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

TC 2.A.1.6.13 / M1Q159 Acetate/monochloroacetate permease, Deh4p, of 468 aas and 12 TMSs from Dehalococcoides mccartyi DCMB5
PFams: Sugar_tr, MFS_1
468 amino acids: PaperBLAST, CDD