GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for SLC1A4 (L-alanine symporter SLC1A4) in L-alanine catabolism

Or see other characterized proteins similar to SLC1A4

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Or cluster curated proteins matching a keyword

Definition of SLC1A4

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 532-553 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

SATT_HUMAN / P43007 Neutral amino acid transporter A; Alanine/serine/cysteine/threonine transporter 1; ASCT-1; SATT; Solute carrier family 1 member 4 from Homo sapiens (Human)
TC 2.A.23.3.1 / P43007 Neutral amino acid (alanine, serine, cysteine, threonine):Na+ symporter. Also transports homocysteine (Jiang et al., 2007). AscT1 is the Syncytin-1 (Q9UQF0) receptor. Syncytin-1, of 538 aas with 4-7 TMSs, is a viral fusion protein and is involved in the development of multiple sclerosis (Antony et al. 2007). Mutation causes nuerological problems including global developmental delay, severe progressive microcephaly, seizures, spasticity and thin corpus callosum (CC) from Homo sapiens (Human)
RF|NP_003029.2 neutral amino acid transporter A from Homo sapiens
PFams: SDF
532 amino acids: PaperBLAST, CDD, Compare to cluster

AAAT_MOUSE / P51912 Neutral amino acid transporter B(0); ATB(0); ASC-like Na(+)-dependent neutral amino acid transporter ASCT2; Insulin-activated amino acid transporter; Sodium-dependent neutral amino acid transporter type 2; Solute carrier family 1 member 5 from Mus musculus (Mouse)
TC 2.A.23.3.2 / P51912 Insulin-activated, Na+-dependet amino acid (serine, alanine, glutamate, glutamine and other neutral amino acids):amino acid antiporter (Ndaru et al. 2019). Also transports homocysteine from Mus musculus (Mouse)
CH_091706 neutral amino acid transporter B(0) from Mus musculus
PFams: SDF
553 amino acids: PaperBLAST, CDD, Compare to cluster