GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to TRIC

Finding the characterized proteins for TRIC (TRIC-type L-alanine transporter) in L-alanine catabolism

Or see clustering for step TRIC

Or see all steps for L-alanine catabolism

Or cluster curated proteins matching a keyword

Definition of TRIC

Fetched 2 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 7 other characterized sequences. (Found 9 hits including self hits.)

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for TRIC.)

b3646 PF03458 family inner membrane protein YicG from Escherichia coli K-12 substr. MG1655
PFams: UPF0126, UPF0126
205 amino acids: PaperBLAST, CDD, ecocyc::EG11683-MONOMER
54% identical to

SO3342 putative transporter, required for L-alanine utilization from Shewanella oneidensis MR-1
PFams: UPF0126, UPF0126
213 amino acids: PaperBLAST, CDD

PS417_02455 putative transporter, required for glycine utilization from Pseudomonas simiae WCS417
PFams: UPF0126, UPF0126
204 amino acids: PaperBLAST, CDD, reanno::WCS417:GFF481
51% identical to

Shewana3_1204 putative transporter, required for glycine and L-alanine utilization from Shewanella sp. ANA-3
PFams: UPF0126, UPF0126
213 amino acids: PaperBLAST, CDD

Pf6N2E2_3621 putative transporter, required for glycine utilization from Pseudomonas fluorescens FW300-N2E2
PFams: UPF0126, UPF0126
203 amino acids: PaperBLAST, CDD, reanno::pseudo6_N2E2:Pf6N2E2_3621
50% identical to

SO3342 putative transporter, required for L-alanine utilization from Shewanella oneidensis MR-1
PFams: UPF0126, UPF0126
213 amino acids: PaperBLAST, CDD

AO353_13110 putative transporter, required for glycine utilization from Pseudomonas fluorescens FW300-N2E3
PFams: UPF0126, UPF0126
203 amino acids: PaperBLAST, CDD, reanno::pseudo3_N2E3:AO353_13110
50% identical to

SO3342 putative transporter, required for L-alanine utilization from Shewanella oneidensis MR-1
PFams: UPF0126, UPF0126
213 amino acids: PaperBLAST, CDD

PfGW456L13_161 putative transporter, required for glycine utilization from Pseudomonas fluorescens GW456-L13
PFams: UPF0126, UPF0126
203 amino acids: PaperBLAST, CDD, reanno::pseudo13_GW456_L13:PfGW456L13_161
49% identical to

SO3342 putative transporter, required for L-alanine utilization from Shewanella oneidensis MR-1
PFams: UPF0126, UPF0126
213 amino acids: PaperBLAST, CDD

TC 1.A.62.2.1 / A0M015 Bacterial TRIC family homologue from Gramella forsetii (strain KT0803)
PFams: UPF0126, UPF0126
215 amino acids: PaperBLAST, CDD, TCDB::A0M015
41% identical to

SO3342 putative transporter, required for L-alanine utilization from Shewanella oneidensis MR-1
PFams: UPF0126, UPF0126
213 amino acids: PaperBLAST, CDD

Psest_1636 putative transporter, required for glycine utilization from Pseudomonas stutzeri RCH2
PFams: UPF0126, UPF0126
208 amino acids: PaperBLAST, CDD, reanno::psRCH2:GFF1599
40% identical to

Shewana3_1204 putative transporter, required for glycine and L-alanine utilization from Shewanella sp. ANA-3
PFams: UPF0126, UPF0126
213 amino acids: PaperBLAST, CDD