GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for alsT (L-alanine symporter AlsT/DagA) in L-alanine catabolism

Or see other characterized proteins similar to alsT

Or see all steps for L-alanine catabolism

Or cluster curated proteins matching a keyword

Definition of alsT

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 445-465 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

ALCP_BACP3 / P30145 Sodium/proton-dependent alanine carrier protein from Bacillus sp. (strain PS3)
TC 2.A.25.1.2 / P30145 Alanine:Na+ (or H+) symporter
PFams: Na_Ala_symp
445 amino acids: PaperBLAST, CDD, Compare to cluster

AGCS_METMP / Q6LX42 Sodium/alanine symporter AgcS; Alanine permease from Methanococcus maripaludis (strain S2 / LL)
TC 2.A.25.1.3 / Q6LX42 Alanine:Na+ symporter, AgcS from Methanococcus maripaludis
PFams: Na_Ala_symp
453 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.25.1.5 / Q45068 Amino-acid carrier protein, AlsT from Bacillus subtilis (strain 168)
PFams: Na_Ala_symp
465 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.25.1.9 / W0WFC6 Probable Glycine/alanine/asparagine/glutamine uptake porter, AgcS from Pseudomonas aeruginosa MH38
PFams: Na_Ala_symp
449 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

TC 2.A.25.1.1 / P30144 Alanine (or glycine):Na+ symporter from Alteromonas haloplanktis
PFams: Na_Ala_symp
542 amino acids: PaperBLAST, CDD