GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for aldox-med ((glycol)aldehyde oxidoreductase, medium subunit) in L-arabinose catabolism

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Definition of aldox-med

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 281-282 amino acids (heteromeric)

The first sequence in each cluster is the seed.

CUTB_SULAC / Q4J6M6 Glyceraldehyde dehydrogenase medium chain; Glyceraldehyde dehydrogenase subunit B; Glyceraldehyde dehydrogenase subunit beta; EC 1.2.99.8 from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
PFams: FAD_binding_5, CO_deh_flav_C
Heteromeric, 281 amino acids: PaperBLAST, CDD, Compare to cluster

Q97VI7 glycolaldehyde oxidoreductase medium subunit from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
PFams: FAD_binding_5, CO_deh_flav_C
Heteromeric, 282 amino acids: PaperBLAST, CDD, Compare to cluster