GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for araE (L-arabinose:H+ symporter) in L-arabinose catabolism

Or see other characterized proteins similar to araE

Or see all steps for L-arabinose catabolism

Or cluster curated proteins matching a keyword

Definition of araE

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Bacillus subtilis

ARAE_BACSU / P96710 Arabinose-proton symporter; Arabinose transporter from Bacillus subtilis (strain 168)
TC 2.A.1.1.55 / P96710 L-arabinose:proton symporter, AraE (Sa-Nogueira and Ramos, 1997). Also transports xylose, galactose and α-1,5 arabinobiose from Bacillus subtilis
PFams: Sugar_tr, MFS_1, MFS_1
464 amino acids: PaperBLAST, CDD (Cluster 1)

Corynebacterium glutamicum

TC 2.A.1.1.116 / C4B4V9 Arabinose/xylose transporter, AraE from Corynebacterium glutamicum
PFams: Sugar_tr, MFS_1, MFS_2, MFS_1
479 amino acids: PaperBLAST, CDD (Cluster 1)

Escherichia coli

b2841 arabinose:H+ symporter from Escherichia coli K-12 substr. MG1655
ARAE_ECOLI / P0AE24 Arabinose-proton symporter; Arabinose transporter from Escherichia coli (strain K12)
TC 2.A.1.1.2 / P0AE24 Arabinose (xylose; galactose):H+ symporter, AraE (low affinity high capacity) from Escherichia coli
P0AE24 arabinose:H+ symporter from Escherichia coli (strain K12)
PFams: TRI12, Sugar_tr, MFS_1
472 amino acids: PaperBLAST, CDD (Cluster 1)