GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to araVsh

Finding the characterized proteins for araVsh (L-arabinose ABC transporter, ATPase component AraV(Sh)) in L-arabinose catabolism

Or see clustering for step araVsh

Or see all steps for L-arabinose catabolism

Or cluster curated proteins matching a keyword

Definition of araVsh

Fetched 1 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 3 other characterized sequences. (Found 3 hits including self hits.)

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for araVsh.)

b4485 galactofuranose ABC transporter putative ATP binding subunit (EC 7.5.2.9) from Escherichia coli K-12 substr. MG1655
Q6BEX0 galactofuranose ABC transporter putative ATP binding subunit (EC 7.5.2.9) from Escherichia coli (strain K12)
PFams: ABC_tran, ABC_tran
Heteromeric, 500 amino acids: PaperBLAST, CDD, ecocyc::YTFR-MONOMER
52% identical to

A0KWY5 ABC transporter related
499 amino acids: PaperBLAST, CDD

FRUK_BIFLO / Q8G847 Fructose import ATP-binding protein FruK; EC 7.5.2.- from Bifidobacterium longum (strain NCC 2705)
PFams: ABC_tran, ABC_tran
513 amino acids: PaperBLAST, CDD, SwissProt::Q8G847
46% identical to

A0KWY5 ABC transporter related
499 amino acids: PaperBLAST, CDD

TC 3.A.1.2.20 / G4FGN3 Monosaccharide-transporting ATPase, component of Glucose porter. Also bind xylose (Boucher and Noll 2011). Induced by glucose (Frock et al. 2012). Directly regulated by glucose-responsive regulator GluR from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: ABC_tran, ABC_tran
Heteromeric, 494 amino acids: PaperBLAST, CDD, TCDB::G4FGN3
41% identical to

A0KWY5 ABC transporter related
499 amino acids: PaperBLAST, CDD