GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for xacB (L-arabinose 1-dehydrogenase) in L-arabinose catabolism

Or see other characterized proteins similar to xacB

Or see all steps for L-arabinose catabolism

Or cluster curated proteins matching a keyword

Definition of xacB

Fetched 12 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 10 of these sequences

Found 2 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by cluster

Acidovorax GW101-3H11

Ac3H11_614 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp. GW101-3H11
PFams: adh_short, adh_short_C2
280 amino acids: PaperBLAST, CDD (Cluster 1)

Azospirillum brasilense

ARAA_AZOBR / Q53TZ2 L-arabinose 1-dehydrogenase (NAD(P)(+)); D-galactose 1-dehydrogenase; EC 1.1.1.376; EC 1.1.1.120; EC 1.1.1.48 from Azospirillum brasilense
Q53TZ2 L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Azospirillum brasilense
PFams: GFO_IDH_MocA
309 amino acids: PaperBLAST, CDD (Cluster 2)

Burkholderia phytofirmans

BPHYT_RS16920 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans PsJN
PFams: KR, adh_short, Epimerase, adh_short_C2
266 amino acids: PaperBLAST, CDD (Cluster 1)

Haloferax volcanii

ARADH_HALVD / D4GP33 L-arabinose 1-dehydrogenase (NAD(P)(+)); L-AraDH; EC 1.1.1.376 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii)
D4GP33 L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376); L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Haloferax volcanii
PFams: RmlD_sub_bind, Epimerase, 3Beta_HSD, GDP_Man_Dehyd, NAD_binding_10, Polysacc_synt_2, NAD_binding_4
254 amino acids: PaperBLAST, CDD (Singleton 1)

Herbaspirillum seropedicae

HSERO_RS05210 L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae SmR1
PFams: adh_short, Epimerase, adh_short_C2
261 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas fluorescens

PfGW456L13_2119 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens GW456-L13
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD (Cluster 1)

Pf1N1B4_412 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens FW300-N1B4
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD (Cluster 1)

AO356_20240 L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens FW300-N2C3
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD (Cluster 1)

Pf6N2E2_5967 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens FW300-N2E2
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD (Cluster 1)

Saccharolobus solfataricus

GLCDH_SACSO / O93715 Glucose 1-dehydrogenase; GDH; GlcDH; Aldose 1-dehydrogenase [NAD(P)(+)]; Galactose 1-dehydrogenase; EC 1.1.1.47; EC 1.1.1.359; EC 1.1.1.120; EC 1.1.1.48 from Saccharolobus solfataricus (Sulfolobus solfataricus)
O93715 aldose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.359) from Saccharolobus solfataricus
Q7LYI9 aldose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.359) from Saccharolobus solfataricus
O93715 aldose 1-dehydrogenase subunit (EC 1.1.1.376; EC 1.1.1.359; EC 1.1.1.119) from Saccharolobus solfataricus
PFams: ADH_N, Glu_dehyd_C
366 amino acids: PaperBLAST, CDD (Singleton 2)

Shewanella ANA-3

Shewana3_2071 L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp. ANA-3
PFams: adh_short, KR, adh_short_C2
256 amino acids: PaperBLAST, CDD (Cluster 1)

Sinorhizobium meliloti

SMc00588 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Sinorhizobium meliloti 1021
PFams: GFO_IDH_MocA
308 amino acids: PaperBLAST, CDD (Cluster 2)