Other Characterized Proteins Similar to xacD

GapMind for catabolism of small carbon sources

Other Characterized Proteins Similar to xacD

Finding the characterized proteins for xacD (L-arabinonate dehydratase) in L-arabinose catabolism

Or see clustering for step xacD

Or see all steps for L-arabinose catabolism

Or cluster curated proteins matching a keyword

Definition of xacD

Curated proteins or TIGRFams with EC 4.2.1.25
Ignore hits to Q92RP0 when looking for 'other' hits (Putative dehydratase IlvD1; EC 4.2.1.-)
Comment: The function of Q92RP0 seems to be unknown so ignore it

Fetched 11 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 11 other characterized sequences. (Found 22 hits including self hits.)

Removing ignored items reduces this to 10 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for xacD.)

GAD_SACS2 / Q97U27 D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus)
Q97U27 gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus
PFams: MR_MLE_N, MR_MLE_C
395 amino acids: PaperBLAST, CDD, BRENDA::Q97U27
62% identical to

Q97VG1 D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
PFams: MR_MLE_N, MR_MLE_C
393 amino acids: PaperBLAST, CDD

GAD_THETE / Q704D2 D-gluconate dehydratase; EC 4.2.1.39 from Thermoproteus tenax
PFams: MR_MLE_N, MR_MLE_C
497 amino acids: PaperBLAST, CDD, SwissProt::Q704D2
53% identical to

G4RJQ1 gluconate dehydratase (EC 4.2.1.39) from Thermoproteus tenax
PFams: MR_MLE_N, MR_MLE_C
391 amino acids: PaperBLAST, CDD, BRENDA::G4RJQ1
53% identical to

SGD_PSEPU / P0DOV7 6-deoxy-6-sulfo-D-gluconate dehydratase; SG dehydratase; EC 4.2.1.162 from Pseudomonas putida (Arthrobacter siderocapsulatus)
PFams: ILVD_EDD
579 amino acids: PaperBLAST, CDD, SwissProt::P0DOV7
46% identical to

PfGW456L13_3320 L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens GW456-L13
PFams: ILVD_EDD
578 amino acids: PaperBLAST, CDD

AO356_28760 Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens FW300-N2C3
PFams: ILVD_EDD
594 amino acids: PaperBLAST, CDD, reanno::pseudo5_N2C3_1:AO356_28760
45% identical to

SM_b20890 L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti 1021
PFams: ILVD_EDD
579 amino acids: PaperBLAST, CDD

Pf6N2E2_1668 Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens FW300-N2E2
PFams: ILVD_EDD
594 amino acids: PaperBLAST, CDD, reanno::pseudo6_N2E2:Pf6N2E2_1668
44% identical to

SM_b20890 L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti 1021
PFams: ILVD_EDD
579 amino acids: PaperBLAST, CDD

GAD_PICTO / Q6L1T2 D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
Q6L1T2 gluconate/galactonate dehydratase (EC 4.2.1.140); gluconate dehydratase (EC 4.2.1.39) from Picrophilus torridus
PFams: MR_MLE_N, MR_MLE_C
391 amino acids: PaperBLAST, CDD, BRENDA::Q6L1T2
44% identical to

XYLD_CAUVC / Q9A9Z2 D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus)
Q9A9Z2 xylonate dehydratase (EC 4.2.1.82) from Caulobacter vibrioides
PFams: ILVD_EDD
595 amino acids: PaperBLAST, CDD, BRENDA::Q9A9Z2
42% identical to

BPHYT_RS19730 L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans PsJN
PFams: ILVD_EDD
577 amino acids: PaperBLAST, CDD

CCNA_00862 Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus NA1000
A0A0H3C6H6 xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides (strain NA1000 / CB15N)
PFams: ILVD_EDD
591 amino acids: PaperBLAST, CDD, metacyc::MONOMER-20629
42% identical to

BPHYT_RS19730 L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans PsJN
PFams: ILVD_EDD
577 amino acids: PaperBLAST, CDD

O27498 dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
PFams: ILVD_EDD
549 amino acids: PaperBLAST, CDD, metacyc::MONOMER-11919
40% identical to

SM_b20890 L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti 1021
PFams: ILVD_EDD
579 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for xacD.)

ILVD1_RHIME / Q92RP0 Putative dehydratase IlvD1; EC 4.2.1.- from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
PFams: ILVD_EDD
574 amino acids: PaperBLAST, CDD, SwissProt::Q92RP0
65% identical to

SM_b20890 L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti 1021
PFams: ILVD_EDD
579 amino acids: PaperBLAST, CDD