GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for adiA (arginine decarboxylase (AdiA/SpeA)) in L-arginine catabolism

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Definition of adiA

Fetched 37 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 34 of these sequences

Found 4 clusters of similar sequences. Another 3 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 502-751 amino acids (not heteromeric)

A0A076IP90 arginine decarboxylase (EC 4.1.1.19) from Bacteroides dorei
PFams: Orn_Arg_deC_N, Arg_decarb_HB, Arg_decarbox_C
630 amino acids: PaperBLAST, CDD, Compare to cluster

A0A0H2ZHZ8 arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa
Q9HUX1 arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa
PFams: Orn_Arg_deC_N, Arg_decarb_HB, Arg_decarbox_C
636 amino acids: PaperBLAST, CDD, Compare to cluster

B3Y023 arginine decarboxylase (EC 4.1.1.19) from Prunus persica
PFams: Orn_Arg_deC_N
725 amino acids: PaperBLAST, CDD, Compare to cluster

F6KDF0 arginine decarboxylase (EC 4.1.1.19) from Citrus trifoliata
PFams: Orn_Arg_deC_N
751 amino acids: PaperBLAST, CDD, Compare to cluster

SPE2_ARATH / O23141 Arginine decarboxylase 2; ADC 2; ARGDC 2; AtADC2; ADC-N; EC 4.1.1.19 from Arabidopsis thaliana (Mouse-ear cress)
O23141 arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana
PFams: Orn_Arg_deC_N
711 amino acids: PaperBLAST, CDD, Compare to cluster

O25176 arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori
PFams: Orn_Arg_deC_N, Arg_decarb_HB, Arg_decarbox_C
615 amino acids: PaperBLAST, CDD, Compare to cluster

b2938 arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli K-12 substr. MG1655
SPEA_ECOLI / P21170 Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli (strain K12)
P21170 arginine decarboxylase (EC 4.1.1.19) from Escherichia coli
P21170 arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli (strain K12)
PFams: Orn_Arg_deC_N, Arg_decarb_HB, Arg_decarbox_C
658 amino acids: PaperBLAST, CDD, Compare to cluster

P72587 arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp. PCC 6803
PFams: Orn_Arg_deC_N, Arg_decarb_HB, Arg_decarbox_C
659 amino acids: PaperBLAST, CDD, Compare to cluster

P74576 arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.
PFams: Orn_Arg_deC_N, Arg_decarb_HB, Arg_decarbox_C
695 amino acids: PaperBLAST, CDD, Compare to cluster

Q0PAC6 arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni
PFams: Orn_Arg_deC_N, Arg_decarb_HB, Arg_decarbox_C
611 amino acids: PaperBLAST, CDD, Compare to cluster

Q39827 arginine decarboxylase (EC 4.1.1.19) from Glycine max
PFams: Orn_Arg_deC_N
692 amino acids: PaperBLAST, CDD, Compare to cluster

Q71S28 arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum
PFams: Orn_Arg_deC_N
721 amino acids: PaperBLAST, CDD, Compare to cluster

Q7MK24 arginine decarboxylase (EC 4.1.1.19) from Vibrio vulnificus
PFams: Orn_Arg_deC_N, Arg_decarb_HB, Arg_decarbox_C
640 amino acids: PaperBLAST, CDD, Compare to cluster

Q8ZHG8 arginine decarboxylase (EC 4.1.1.19) from Yersinia pestis
PFams: Orn_Arg_deC_N, Arg_decarb_HB, Arg_decarbox_C
659 amino acids: PaperBLAST, CDD, Compare to cluster

Q9LDM9 arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum
PFams: Orn_Arg_deC_N
720 amino acids: PaperBLAST, CDD, Compare to cluster

Q9M7K9 arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum
PFams: Orn_Arg_deC_N
721 amino acids: PaperBLAST, CDD, Compare to cluster

SPE1_ARATH / Q9SI64 Arginine decarboxylase 1; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana (Mouse-ear cress)
Q9SI64 arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana
PFams: Orn_Arg_deC_N
702 amino acids: PaperBLAST, CDD, Compare to cluster

ADC2_ORYSJ / Q7XRA1 Arginine decarboxylase 2; ARGDC2; OsADC2; EC 4.1.1.19 from Oryza sativa subsp. japonica (Rice)
PFams: Orn_Arg_deC_N
623 amino acids: PaperBLAST, CDD, Compare to cluster

SPE1_ORYSJ / Q9SNN0 Arginine decarboxylase 1; ARGDC1; OsADC1; EC 4.1.1.19 from Oryza sativa subsp. japonica (Rice)
Q9SNN0 arginine decarboxylase (EC 4.1.1.19) from Oryza sativa
PFams: Orn_Arg_deC_N
702 amino acids: PaperBLAST, CDD, Compare to cluster

P22220 arginine decarboxylase (EC 4.1.1.19) from Avena sativa
P22220 arginine decarboxylase (EC 4.1.1.19) from Avena sativa
PFams: Orn_Arg_deC_N
607 amino acids: PaperBLAST, CDD, Compare to cluster

Q9M618 arginine decarboxylase (EC 4.1.1.19) from Brassica juncea
PFams: Orn_Arg_deC_N
692 amino acids: PaperBLAST, CDD, Compare to cluster

Q9M617 arginine decarboxylase (EC 4.1.1.19) from Brassica juncea
PFams: Orn_Arg_deC_N
680 amino acids: PaperBLAST, CDD, Compare to cluster

Q43075 arginine decarboxylase (EC 4.1.1.19) from Pisum sativum
PFams: Orn_Arg_deC_N
728 amino acids: PaperBLAST, CDD, Compare to cluster

P49726 arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum
PFams: Orn_Arg_deC_N
502 amino acids: PaperBLAST, CDD, Compare to cluster

A5KI48 arginine decarboxylase (biosynthetic) subunit (EC 4.1.1.19) from Campylobacter jejuni subsp. jejuni CG8486
PFams: Orn_Arg_deC_N, Arg_decarb_HB, Arg_decarbox_C
610 amino acids: PaperBLAST, CDD, Compare to cluster

Psest_3366 Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri RCH2
PFams: Orn_Arg_deC_N, Arg_decarb_HB, Arg_decarbox_C
637 amino acids: PaperBLAST, CDD, Compare to cluster

Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens FW300-N1B4
PFams: Orn_Arg_deC_N, Arg_decarb_HB, Arg_decarbox_C
637 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 157-165 amino acids (not heteromeric)

Q5JFI4 arginine decarboxylase (EC 4.1.1.19) from Thermococcus kodakarensis
PFams: PvlArgDC
157 amino acids: PaperBLAST, CDD, Compare to cluster

D4GTI7 arginine decarboxylase (EC 4.1.1.19) from Haloferax volcanii
PFams: PvlArgDC
157 amino acids: PaperBLAST, CDD, Compare to cluster

PDAD_METJA / Q57764 Pyruvoyl-dependent arginine decarboxylase; PvlArgDC; EC 4.1.1.19 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Q57764 arginine decarboxylase (EC 4.1.1.19) from Methanocaldococcus jannaschii
PFams: PvlArgDC
165 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 195-195 amino acids (not heteromeric)

J9TAW8 arginine decarboxylase (EC 4.1.1.19) from Chlamydia caviae
PFams: PvlArgDC
195 amino acids: PaperBLAST, CDD, Compare to cluster

AAXB_CHLPN / Q9Z6M7 Pyruvoyl-dependent arginine decarboxylase AaxB; PvlArgDC; Biodegradative arginine decarboxylase; EC 4.1.1.19 from Chlamydia pneumoniae (Chlamydophila pneumoniae)
PFams: PvlArgDC
195 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 4 755-756 amino acids (not heteromeric)

E8X9U7 arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
756 amino acids: PaperBLAST, CDD, Compare to cluster

b4117 arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli K-12 substr. MG1655
P28629 arginine decarboxylase (EC 4.1.1.19) from Escherichia coli
P28629 arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli (strain K12)
GI|145339 biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli K12
PFams: OKR_DC_1_N, OKR_DC_1, Pyridoxal_deC, OKR_DC_1_C
755 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (1/3 heteromeric)

Q5NT93 arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium
PFams: OKR_DC_1, Aminotran_1_2, Aminotran_5, Beta_elim_lyase, DegT_DnrJ_EryC1, OKR_DC_1_C
485 amino acids: PaperBLAST, CDD

ARGDC_SACS2 / Q9UWU1 Arginine decarboxylase proenzyme; ADC; ArgDC; Pyruvoyl-dependent arginine decarboxylase; EC 4.1.1.19 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus)
Q9UWU1 arginine decarboxylase (EC 4.1.1.19) from Saccharolobus solfataricus
PFams: AdoMet_dc
Heteromeric, 134 amino acids: PaperBLAST, CDD

AZIN2_HUMAN / Q96A70 Antizyme inhibitor 2; AzI2; Arginine decarboxylase; ADC; ARGDC; Ornithine decarboxylase-like protein; ODC-like protein; ornithine decarboxylase paralog; ODC-p from Homo sapiens (Human)
Q96A70 arginine decarboxylase (EC 4.1.1.19) from Homo sapiens
Q96A70 arginine decarboxylase (EC 4.1.1.19) from Homo sapiens
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
460 amino acids: PaperBLAST, CDD