GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for aguA (agmatine deiminase) in L-arginine catabolism

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Definition of aguA

Fetched 12 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 12 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 330-383 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q9ABL6 agmatine deiminase (EC 3.5.3.12) from Caulobacter vibrioides
PFams: PAD_porph
370 amino acids: PaperBLAST, CDD, Compare to cluster

O86509 agmatine deiminase (EC 3.5.3.12) from Streptomyces coelicolor
PFams: PAD_porph
339 amino acids: PaperBLAST, CDD, Compare to cluster

Q5KR05 agmatine deiminase (EC 3.5.3.12) from Selenomonas ruminantium
PFams: PAD_porph
371 amino acids: PaperBLAST, CDD, Compare to cluster

Q837U5 agmatine deiminase (EC 3.5.3.12) from Enterococcus faecalis
PFams: PAD_porph
365 amino acids: PaperBLAST, CDD, Compare to cluster

Q9CEY6 agmatine deiminase (EC 3.5.3.12) from Lactococcus lactis
PFams: PAD_porph
366 amino acids: PaperBLAST, CDD, Compare to cluster

AGUA_PSEAE / Q9I6J9 Agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J9 agmatine deiminase (EC 3.5.3.12) from Pseudomonas aeruginosa
PFams: PAD_porph
368 amino acids: PaperBLAST, CDD, Compare to cluster

Q9PAQ3 agmatine deiminase (EC 3.5.3.12) from Xylella fastidiosa
PFams: PAD_porph
363 amino acids: PaperBLAST, CDD, Compare to cluster

Q9ZN18 agmatine deiminase (EC 3.5.3.12) from Helicobacter pylori
PFams: PAD_porph
330 amino acids: PaperBLAST, CDD, Compare to cluster

S0F349 agmatine deiminase (EC 3.5.3.12) from Lactococcus lactis subsp. cremoris
PFams: PAD_porph
366 amino acids: PaperBLAST, CDD, Compare to cluster

AGUA_ARATH / Q8GWW7 Agmatine deiminase; Agmatine iminohydrolase; Protein EMBRYO DEFECTIVE 1873; EC 3.5.3.12 from Arabidopsis thaliana (Mouse-ear cress)
Q8GWW7 agmatine iminohydrolase (EC 3.5.3.12) from Arabidopsis thaliana
PFams: PAD_porph
383 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_10030 Agmatine deiminase (EC 3.5.3.12) from Pseudomonas fluorescens FW300-N2C3
PFams: PAD_porph
368 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

Q0P9V0 agmatine deiminase (EC 3.5.3.12) from Campylobacter jejuni
PFams: PAD_porph
325 amino acids: PaperBLAST, CDD
(similar to BRENDA::Q9PAQ3 from Cluster 1, but similarity to seed sequence is below thresholds)