GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for aguB (N-carbamoylputrescine hydrolase) in L-arginine catabolism

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Definition of aguB

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 290-300 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q5KR04 N-carbamoylputrescine amidase (EC 3.5.1.53) from Selenomonas ruminantium
PFams: CN_hydrolase
290 amino acids: PaperBLAST, CDD, Compare to cluster

NILP1_ARATH / Q8VYF5 N-carbamoylputrescine amidase; Nitrilase-like protein 1; EC 3.5.1.53 from Arabidopsis thaliana (Mouse-ear cress)
Q8VYF5 At2g27450-monomer (EC 3.5.1.53) from Arabidopsis thaliana
PFams: CN_hydrolase
299 amino acids: PaperBLAST, CDD, Compare to cluster

AGUB_SOLLC / Q9XGI9 N-carbamoylputrescine amidase; EC 3.5.1.53 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
PFams: CN_hydrolase
300 amino acids: PaperBLAST, CDD, Compare to cluster

A0A1J6PBK3 N-carbamoylputrescine amidohydrolase (EC 3.5.1.53) from Campylobacter jejuni
PFams: CN_hydrolase
290 amino acids: PaperBLAST, CDD, Compare to cluster