GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for arcA (arginine deiminase) in L-arginine catabolism

Or see other characterized proteins similar to arcA

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Definition of arcA

Fetched 10 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 408-452 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

B5XMC3 arginine deiminase (EC 3.5.3.6) from Streptococcus pyogenes
PFams: Amidinotransf
411 amino acids: PaperBLAST, CDD, Compare to cluster

A7LKB0 arginine deiminase (EC 3.5.3.6) from Pseudomonas plecoglossicida
PFams: Amidinotransf
417 amino acids: PaperBLAST, CDD, Compare to cluster

P13981 arginine deiminase (EC 3.5.3.6) from Pseudomonas aeruginosa
PFams: Amidinotransf
418 amino acids: PaperBLAST, CDD, Compare to cluster

Q2HYA0 arginine deiminase (EC 3.5.3.6) from Lactococcus lactis ssp. lactis
PFams: Amidinotransf
410 amino acids: PaperBLAST, CDD, Compare to cluster

Q8EVF6 arginine deiminase (EC 3.5.3.6) from Mycoplasma penetrans
PFams: Amidinotransf
452 amino acids: PaperBLAST, CDD, Compare to cluster

GI|14349116 arginine deiminase; EC 3.5.3.6 from Enterococcus faecalis
PFams: Amidinotransf
408 amino acids: PaperBLAST, CDD, Compare to cluster

ARCA_STRGC / A8AYL1 Arginine deiminase; ADI; Arginine dihydrolase; AD; EC 3.5.3.6 from Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288)
PFams: Amidinotransf
409 amino acids: PaperBLAST, CDD, Compare to cluster

ARCA_STRPY / P0C0B3 Arginine deiminase; ADI; Arginine dihydrolase; AD; Streptococcal acid glycoprotein; EC 3.5.3.6 from Streptococcus pyogenes
PFams: Amidinotransf
411 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

Q27657 arginine deiminase (EC 3.5.3.6) from Giardia intestinalis
Q27657 arginine deiminase subunit (EC 3.5.3.6) from Giardia intestinalis
PFams: Amidinotransf
580 amino acids: PaperBLAST, CDD

ARCA_HALS3 / B0R9X5 Arginine deiminase; ADI; Arginine dihydrolase; AD; EC 3.5.3.6 from Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
PFams: Amidinotransf, Amidinotransf
486 amino acids: PaperBLAST, CDD