Other Characterized Proteins Similar to artQ

GapMind for catabolism of small carbon sources

Other Characterized Proteins Similar to artQ

Finding the characterized proteins for artQ (L-arginine ABC transporter, permease component 2 (ArtQ/HisQ/AotQ)) in L-arginine catabolism

Or see clustering for step artQ

Or see all steps for L-arginine catabolism

Or cluster curated proteins matching a keyword

Definition of artQ

Curated sequence Q9HU30: Probable permease of ABC transporter, component of Amino acid transporter, PA5152-PA5155. Probably transports numerous amino acids including lysine, arginine, histidine, D-alanine and D-valine (Johnson et al. 2008). Regulated by ArgR
Curated sequence CH_107317: arginine/ornithine transport protein. AotQ, component of Arginine/ornithine (but not lysine) porter
Curated sequence P0A2I9: Histidine transport system permease protein HisQ. Histidine transport system permease protein HisQ aka STM2353, component of Histidine/arginine/lysine/ornithine porter (Heuveling et al. 2014). In contrast to some homologous homodimeric systems, the heterodimeric histidine transporter of Salmonella enterica Typhimurium
Curated sequence P0AE34: Arginine ABC transporter permease protein ArtQ. Arginine transport system permease protein ArtQ aka B0862, component of Arginine porter. L-arginine ABC transporter membrane subunit ArtQ (EC 7.4.2.1). L-arginine ABC transporter membrane subunit ArtQ (EC 7.4.2.1)
Curated sequence P52094: Histidine transport system permease protein HisQ. Histidine transport system permease protein HisQ, component of Histidine/Arginine/Lysine (basic amino acid) uptake porter, HisJ/ArgT/HisP/HisM/HisQ [R, R, C, M, M, respectively] (Gilson et al. 1982). HisJ binds L-His (preferred), but 1-methyl-L-His and 3-methyl-L-His also bind, while the dipeptide carnosine binds weakly; D-histidine and the histidine degradation products, histamine, urocanic acid and imidazole do not bind. L-Arg, homo-L-Arg, and post-translationally modified methylated Arg-analogs also bind with the exception of symmetric dimethylated-L-Arg. L-Lys and L-Orn show weaker interactions with HisJ and methylated and acetylated Lys variants show poor binding.The carboxylate groups of these amino acids and their variants are essential. lysine/arginine/ornithine ABC transporter / histidine ABC transporter, membrane subunit HisQ (EC 7.4.2.1)
Curated sequence BPHYT_RS07675: ABC transporter for L-Arginine, permease component 2
Curated sequence GFF4244: ABC transporter for L-Arginine, permease component 1
Curated sequence Pf1N1B4_3432: ABC transporter for L-Arginine and L-Citrulline, permease component 1
Curated sequence AO353_03050: ABC transporter for L-Arginine and L-Citrulline, permease component 2
Curated sequence AO356_18705: L-Arginine ABC transporter, permease component 2
Curated sequence Pf6N2E2_5661: L-Arginine ABC transporter, permease protein AotQ
Ignore hits to AO356_09905 when looking for 'other' hits (ABC transporter for L-Lysine, permease component 1)
Ignore hits to Pf6N2E2_2959 when looking for 'other' hits (ABC transporter for L-Lysine, permease component 1)
Ignore hits to AO356_05500 when looking for 'other' hits (ABC transporter for L-Lysine, permease component 1)
Comment: Ignore closely related lysine transporters in P. fluorescens (which may well transport arginine; AO356_09905 has a subtle defect in arginine utilization)

Fetched 11 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 5 other characterized sequences. (Found 16 hits including self hits.)

Removing ignored items reduces this to 2 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for artQ.)

TC 3.A.1.3.5 / P0A4N5 Octopine transport system permease protein occQ, component of Octopine porter from Agrobacterium tumefaciens
PFams: BPD_transp_1
Heteromeric, 237 amino acids: PaperBLAST, CDD, TCDB::P0A4N5
43% identical to

TC 3.A.1.3.23 / Q9HU30 Probable permease of ABC transporter, component of Amino acid transporter, PA5152-PA5155. Probably transports numerous amino acids including lysine, arginine, histidine, D-alanine and D-valine (Johnson et al. 2008). Regulated by ArgR from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
PFams: BPD_transp_1
Heteromeric, 231 amino acids: PaperBLAST, CDD

TC 3.A.1.3.6 / P35118 NocQ aka ATU6026 aka AGR_PTI_66, component of Nopaline porter from Agrobacterium tumefaciens
PFams: BPD_transp_1
Heteromeric, 236 amino acids: PaperBLAST, CDD, TCDB::P35118
42% identical to

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for artQ.)

AO356_09905 ABC transporter for L-Lysine, permease component 1 from Pseudomonas fluorescens FW300-N2C3
PFams: BPD_transp_1
Heteromeric, 231 amino acids: PaperBLAST, CDD, reanno::pseudo5_N2C3_1:AO356_09905
67% identical to

Pf6N2E2_2959 ABC transporter for L-Lysine, permease component 1 from Pseudomonas fluorescens FW300-N2E2
PFams: BPD_transp_1
Heteromeric, 242 amino acids: PaperBLAST, CDD, reanno::pseudo6_N2E2:Pf6N2E2_2959
66% identical to

BPHYT_RS07675 ABC transporter for L-Arginine, permease component 2 from Burkholderia phytofirmans PsJN
PFams: BPD_transp_1
Heteromeric, 229 amino acids: PaperBLAST, CDD

AO356_05500 ABC transporter for L-Lysine, permease component 1 from Pseudomonas fluorescens FW300-N2C3
PFams: BPD_transp_1
Heteromeric, 242 amino acids: PaperBLAST, CDD, reanno::pseudo5_N2C3_1:AO356_05500
66% identical to

BPHYT_RS07675 ABC transporter for L-Arginine, permease component 2 from Burkholderia phytofirmans PsJN
PFams: BPD_transp_1
Heteromeric, 229 amino acids: PaperBLAST, CDD