GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for astB (N-succinylarginine dihydrolase) in L-arginine catabolism

Or see other characterized proteins similar to astB

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Definition of astB

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 441-447 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b1745 N-succinylarginine dihydrolase (EC 3.5.3.23) from Escherichia coli K-12 substr. MG1655
ASTB_ECOLI / P76216 N-succinylarginine dihydrolase; EC 3.5.3.23 from Escherichia coli (strain K12)
P76216 N-succinylarginine dihydrolase (EC 3.5.3.23) from Escherichia coli (strain K12)
RF|NP_416259.1 N-succinylarginine dihydrolase; EC 3.5.3.23 from Escherichia coli K12
PFams: AstB
447 amino acids: PaperBLAST, CDD, Compare to cluster

ASTB_SALTY / Q8ZPU9 N-succinylarginine dihydrolase; EC 3.5.3.23 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: AstB
447 amino acids: PaperBLAST, CDD, Compare to cluster

Shewana3_1728 Succinylarginine dihydrolase (EC 3.5.3.23) from Shewanella sp. ANA-3
PFams: AstB
444 amino acids: PaperBLAST, CDD, Compare to cluster

BWI76_RS11685 Succinylarginine dihydrolase (EC 3.5.3.23) from Klebsiella michiganensis M5al
PFams: AstB
441 amino acids: PaperBLAST, CDD, Compare to cluster

SO2706 Succinylarginine dihydrolase (EC 3.5.3.23) from Shewanella oneidensis MR-1
PFams: AstB
444 amino acids: PaperBLAST, CDD, Compare to cluster

Sama_1321 Succinylarginine dihydrolase (EC 3.5.3.23) from Shewanella amazonensis SB2B
PFams: AstB
444 amino acids: PaperBLAST, CDD, Compare to cluster