GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for astE (succinylglutamate desuccinylase) in L-arginine catabolism

Or see other characterized proteins similar to astE

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Definition of astE

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 322-342 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

O50177 succinylglutamate desuccinylase (EC 3.5.1.96) from Pseudomonas aeruginosa
PFams: AstE_AspA
332 amino acids: PaperBLAST, CDD, Compare to cluster

b1744 succinylglutamate desuccinylase (EC 3.5.1.96) from Escherichia coli K-12 substr. MG1655
ASTE_ECOLI / P76215 Succinylglutamate desuccinylase; EC 3.5.1.96 from Escherichia coli (strain K12)
P76215 succinylglutamate desuccinylase (EC 3.5.1.96) from Escherichia coli
P76215 succinylglutamate desuccinylase (EC 3.5.1.96) from Escherichia coli (strain K12)
PFams: AstE_AspA
322 amino acids: PaperBLAST, CDD, Compare to cluster

ASTE_SALTY / Q8ZPU8 Succinylglutamate desuccinylase; EC 3.5.1.96 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: AstE_AspA
322 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS07720 Succinylglutamate desuccinylase (EC 3.5.1.96) from Burkholderia phytofirmans PsJN
PFams: AstE_AspA
342 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_1977 Succinylglutamate desuccinylase (EC 3.5.1.96) from Pseudomonas fluorescens GW456-L13
PFams: AstE_AspA
336 amino acids: PaperBLAST, CDD, Compare to cluster