GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for davD (glutarate semialdehyde dehydrogenase) in L-arginine catabolism

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Definition of davD

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 480-483 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q88RC0 glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas putida
PFams: Aldedh
480 amino acids: PaperBLAST, CDD, Compare to cluster

DAVD_PSEAE / Q9I6M5 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6M5 glutarate semialdehyde dehydrogenase from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aldedh
483 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_495 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas fluorescens GW456-L13
PFams: Aldedh
480 amino acids: PaperBLAST, CDD, Compare to cluster